| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0727 |
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| Symbol | |
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| ID | 4243175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 1175476 |
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| End bp | 1177374 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638106019 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_720632 |
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| Protein GI | 113474571 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.548053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.146033 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAAA AAAACAAAGT AAAACAGTCT ATATTAGCTA GTCAAAAGCA CTTATTAAGT
TTACAAGAAA CAGAAGGATA CTGGTGGGGT CAACTAGAAT CAAATGTCAC AATAACAGCA
GAAATAATTT TACTACATAA AATTTGGCAA ACTGATAAAA AAATACCATT GAATAAGGCA
AAAAATTACC TAATATCTCA ACAACGAGAA CATGGTGGTT GGGAACTATT TTATGGGGAT
GGAGGAGACT TAAGCACTTC TATTGAAGCT TATATGGCTT TGAGATTATT GGGTGTTTCA
AGAACAGATC CAATTATGAT TGAAGCACAA AATTTTATTA TTAAAAAAGG TGGTATTAGT
TGCAGCAGAA TTTTTACTAA ATTACATTTG GCTTTAATTG GATGCTACAG CTGGCAGGGT
ATTCCTTCTA TTCCTTCTAG CATAATGCTA CTTCCTGAAG ATTTTCCATT TACTATTTAT
GAAATGTCAA GTTGGGCAAG AAGTAGTACT GTTCCACTAT TAATTGTGTT TGATAAAAAG
CCGATTTTTT CTGTTAACCC CACTATTAAT CTTGATGAGC TTTATGCCGA AGGAATTAAC
AATGCTAGTT TTGAATTACC TCGTAAATAC GATCTGACAG ATTTATTTTT GGGACTAGAT
AAGGCTTTTA AATTTGCAGA AAATTTGAAT TTGATGCCTT TGCAACAGGA AGGATTAAAA
GCAGCAGAAA AATGGATTTT AGAAAGGCAA GAGGTTACGG GTGACTGGGG GGGTATTATT
CCGGCTATGT TAAATTCTAT GTTGGCATTA AAATGCTTGG AATATGATGT GGCTGACCCT
GTGGTGGTGC GGGGACTGGA GGCTATAGAT AGGTTTGCTA TAGAAAATGA GGATAGTTAT
CGGGTACAAG CCTGTGTATC TCCAGTGTGG GATACCGCTT GGGTAATACG TTCGTTGGTT
GATTCTGGTA TTTCTCCTAG TCATCCGGCA ATGGTTAAGG CTGGACAATG GTTGTTGCAA
CAGCAAATTT TGGATTATGG TGATTGGGTG TTTAAGAATA AATTTGGTAA ACCGGGGGGT
TGGGCGTTTG AATTTATGAA TCGTTTTTAT CCAGATATAG ATGATACGGC GGTAGTGGTT
ATGGCTTTGG ATGTTGTAGA GTTGCCTGAT GAGGATCTGA AAGGTAAGGC GATCGCTCGT
GGCATGGAGT GGATAGCTTC GATGCAATGT GAAGCTGGTG GTTGGGCAGC TTTTGATGTA
GATAATAATC AAGACTGGTT GAATGCTACT CCTTATGGAG ATTTAAAGGC GATGATCGAT
CCGAATACGG CAGATGTGAC GGGGCGGGTA TTGGAAATGG TTGGTTGTTG TGGGTTAGCT
ATGGATAGTT GGCGGGTGAA ACGGGGGATC GATTTTTTGG TAAGGGAGCA GGAAGAGGAA
GGTTGTTGGT TTGGTCGGTG GGGAGTTAAT TATATATACG GTACGAGTGG AGTTATTTTG
GCTTTGGCTG TTATGGCACG GGAAAGTCAC CGAGGTTATA TAGAGAGGGG GGCAAGTTGG
TTGGTTGGTT GTCAAAATTC GGATGGTGGA TGGGGTGAAA GTTGTTGGAG TTATAATGAT
CCGTCGTTGA AGGGGAAGGG GAAAAGTACG GCTTCTCAGA CTGCTTGGGC GTTAATTGGT
TTATTGGCTG CGGGGGAGGG GACTGGTAAT TTTGCTAGGG ATGCTATTGA TGGGGGTGTG
GGTTTTTTAG TTTCGACTCA GAATGATGAT GGGAGTTGGC TGGAGGATGA GTTTACTGGT
ACTGGGTTTC CTGGTCATTT TTATATTAAG TATCATTTTT ATTCACAGTA TTTTCCTTTG
ATGGCTTTGG GAAGGTATGA GAGTTTGTTA AGTGGTTGA
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| Protein sequence | MIEKNKVKQS ILASQKHLLS LQETEGYWWG QLESNVTITA EIILLHKIWQ TDKKIPLNKA
KNYLISQQRE HGGWELFYGD GGDLSTSIEA YMALRLLGVS RTDPIMIEAQ NFIIKKGGIS
CSRIFTKLHL ALIGCYSWQG IPSIPSSIML LPEDFPFTIY EMSSWARSST VPLLIVFDKK
PIFSVNPTIN LDELYAEGIN NASFELPRKY DLTDLFLGLD KAFKFAENLN LMPLQQEGLK
AAEKWILERQ EVTGDWGGII PAMLNSMLAL KCLEYDVADP VVVRGLEAID RFAIENEDSY
RVQACVSPVW DTAWVIRSLV DSGISPSHPA MVKAGQWLLQ QQILDYGDWV FKNKFGKPGG
WAFEFMNRFY PDIDDTAVVV MALDVVELPD EDLKGKAIAR GMEWIASMQC EAGGWAAFDV
DNNQDWLNAT PYGDLKAMID PNTADVTGRV LEMVGCCGLA MDSWRVKRGI DFLVREQEEE
GCWFGRWGVN YIYGTSGVIL ALAVMARESH RGYIERGASW LVGCQNSDGG WGESCWSYND
PSLKGKGKST ASQTAWALIG LLAAGEGTGN FARDAIDGGV GFLVSTQNDD GSWLEDEFTG
TGFPGHFYIK YHFYSQYFPL MALGRYESLL SG
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