| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0725 |
|---|
| Symbol | mnmA |
|---|
| ID | 4243173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 1173852 |
|---|
| End bp | 1174931 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638106017 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_720630 |
|---|
| Protein GI | 113474569 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.77868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.239364 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA TTATAGTTGG TCTCTCTGGT GGAGTTGATA GTTCCACAGC AGCAGCAATA
TTGCATCATC AAGGATATCA AGTCGAGGGC TTAACTCTTT GGTTAATGAA AGGAAAAGGT
CAATGTTGTT CTGAAGGAAT GGTTGATGCT GCCTATATTT GCGAACAATT AGATATTCCC
CATCATATTG TCGATACTCG CAATTTATTT CAAGCAAATA TTGTTGATTA TTTGGTGACT
GGTTACAGTG CCGGAATTAC TCCACTACCT TGTTCTCAAT GTAATAAAAC AGTAAAATTT
GGTCCCATGT TAGCTTATGG TCGTGAAAAA TTAGGTATTG ACAAAATTGC CACAGGGCAC
TATGCACGAC TTGATTATGA CTCAAAAAGC GATCGCTATC TATTAAAACG TGCAATTGAT
CGTAATAAAG ACCAGTCTTA TTTTTTGTAT GATTTAACAC AGTACTTATT GGCAGGTTCA
GTATTTCCTC TAGGAGAAAT GGTAAAGAGT GAAACCCGAC GCATTGCAGC AGAATATGGT
TTGAAAACTG CTGACAAACC AGAAAGTCAG GATTTATGTT TGGTAGAGTC TAGCGGTTCC
ATGCGGGCAT TTTTAGATAA ATATATTACT CCCCATCAAG GTGAAATAGT TGACCGAGAG
GGACGAGTTT TGGGAAGACA CGATGGTGTC CATCATTATA CTATTGGCCA AAGAAAAGGT
TTAGGAGTTT CTGCCCCTCA TCCCTTATAT GTGATAGACC TAGACCCAGC AATGAATAAA
GTAATAGTGG GCGATCGCGA TAGCGCGACT AAAATGGAAT CTACTGTGAA GCTGGTTAAC
TGGGTTTCTA TTGCCCCACC AAGTACATCA ATACGCGCAG AGGTACAAGT GAGGTACCGC
AGTTTACCCG TAGCTGCAAA TATTATTCCT TTGGGTGTTA ATGAAGAAAA ACCTCAAGAT
GGTTTTCGAG TTAAGTTAAT TTTTGAAGAA GCAGTTTTTG GTATAACTCC CGGGCAAGCT
GCTGTTTGGT ATGAAGGAGA TATTTTGTTG GGTGGAGGGA TCATAGAAAA CGAGAAGTAA
|
|---|
| Protein sequence | MNKIIVGLSG GVDSSTAAAI LHHQGYQVEG LTLWLMKGKG QCCSEGMVDA AYICEQLDIP
HHIVDTRNLF QANIVDYLVT GYSAGITPLP CSQCNKTVKF GPMLAYGREK LGIDKIATGH
YARLDYDSKS DRYLLKRAID RNKDQSYFLY DLTQYLLAGS VFPLGEMVKS ETRRIAAEYG
LKTADKPESQ DLCLVESSGS MRAFLDKYIT PHQGEIVDRE GRVLGRHDGV HHYTIGQRKG
LGVSAPHPLY VIDLDPAMNK VIVGDRDSAT KMESTVKLVN WVSIAPPSTS IRAEVQVRYR
SLPVAANIIP LGVNEEKPQD GFRVKLIFEE AVFGITPGQA AVWYEGDILL GGGIIENEK
|
|---|
| |