| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0722 |
|---|
| Symbol | |
|---|
| ID | 4242512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 1168841 |
|---|
| End bp | 1169767 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638106014 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_720627 |
|---|
| Protein GI | 113474566 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.145284 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.441683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTA CTAATATTAA TACAGATTTG TATTTCACTG AGCAAATTAC ACCCTGGGAC
ATTTATAAAC ATGGTATTGA CCAGGTGCTT GTTTATCAAA AAACAAAATA TCAGGAAATT
TATATTGTCA AGGGTGTTTA TGGTAAAGCT TTAATATTAG ATGGTAAGTG GCAGTCTTGC
ACTGCAGATG AATTTCTCTA CCATGAAGGC TTGGTACATC CAGCTATGAT TTGTCATGGG
TCTCCACGAA AAGTCTTAGT ATTTGGAGGA GCAGAAGGAG CAACAATACG AGAAGTATTA
CGCTGGAAAA CAGTTGAGCA AGTAGTTATG GTTGACATAG ATGAGAAGGT TGTAGAAGCT
TGCAAAAAGT ATTTGCCTGA AATGCACCAA AATTCTTTTG AAGACCCCCG TGTAGAGTTA
ATCATCGATG ATGCTCAGAA TTTTTTAGAC TCTTCTAATG AAACTTGGGA TGTAATTATT
TCTGACCTGA CAGATCCTAT TGAACATGGT CTTTCTTTTC CTTTATTTAC TCAGGAATAC
TTTCAAAAAA TTTCCCAAGT TTTGTCGGCT TTAGGCTCGT TTATAATACA AGGGGGTTCA
ATTTCTCCTG CTGAGATGTA TCTTCATGCT CGTGTAGTTA AAACTTTACA AAGTGTATTT
AATTGTGTTT ATTCCCTGAT ACCTTATTCT ACGAGTTATG GATGTCCATT AGGGTTTGTT
GTTTGTTCTG AGCAAAAATT TTCTTCTACA CCAAACCCAG AAAAAGTAGA CCGTTTATTG
GCAGAAAAAA CTACAGGCGG TTTTAAGTTT ATGGATGGTG TTTCTTTATT GGGTATGTTG
CAAATACCTT TGAATTTACG ACAGGCGATC GCTACAGAAA CTCAGATATA TACTTTGAAA
ACTCCACCAA AATCTATTCA GGTTTGA
|
|---|
| Protein sequence | MAGTNINTDL YFTEQITPWD IYKHGIDQVL VYQKTKYQEI YIVKGVYGKA LILDGKWQSC
TADEFLYHEG LVHPAMICHG SPRKVLVFGG AEGATIREVL RWKTVEQVVM VDIDEKVVEA
CKKYLPEMHQ NSFEDPRVEL IIDDAQNFLD SSNETWDVII SDLTDPIEHG LSFPLFTQEY
FQKISQVLSA LGSFIIQGGS ISPAEMYLHA RVVKTLQSVF NCVYSLIPYS TSYGCPLGFV
VCSEQKFSST PNPEKVDRLL AEKTTGGFKF MDGVSLLGML QIPLNLRQAI ATETQIYTLK
TPPKSIQV
|
|---|
| |