Gene Tery_0324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTery_0324 
SymbolrpsD 
ID4243139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTrichodesmium erythraeum IMS101 
KingdomBacteria 
Replicon accessionNC_008312 
Strand
Start bp499291 
End bp499899 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content40% 
IMG OID638105657 
Product30S ribosomal protein S4 
Protein accessionYP_720272 
Protein GI113474211 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000226614 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTAGGT ATAGAGGTCC ACGTTTAAGA ATAGTGCGTC GTCTAGGTGA TCTACCGGGG 
CTAACTCGTA AAAGTGCCAG ACGTGCTTAT CCACCTGGTC AACATGGTCA AAATCGCAGA
AAGCGTTCAG AATATGCGAT TCGACTGGAA GAGAAACAGA AACTACTATA TAATTATGGT
GTTTGTGAAC GTCAACTCCT ACGCTACGTA AAAAAAGCTC GTCGTGCAGG AGGTTCCACA
GGAAAAGTAT TACTAGAACT TCTGGAAATG CGTTTAGATA ATACTGTATT TCGTTTAGGA
ATGGCTCCAA CTATTCCTTC TGCACGACAG TTAGTGAACC ATGGTCATGT CACAGTTAAT
GGTAAGGTAG TAAGTATTGC TAGCTACCAG TGTAAACCTG GAGAGGTAAT TAGTGTTAAG
GAAAAAGAAA AATCTAAGGA AATGGTCAAG ACTAATCTCC AATATCCAGG TTTAGCTAAT
ATTCCTAGCC ATTTAGAATT TGATAAAAAC AAGCTGGTTG GTAAAGTTAA TGGTATTGTG
GAACGGGAGT GGGTGGCGCT TCAAATTAAC GAACTGTTAA TTGTGGAATA TTATTCCAGA
CAAGCTTAG
 
Protein sequence
MSRYRGPRLR IVRRLGDLPG LTRKSARRAY PPGQHGQNRR KRSEYAIRLE EKQKLLYNYG 
VCERQLLRYV KKARRAGGST GKVLLELLEM RLDNTVFRLG MAPTIPSARQ LVNHGHVTVN
GKVVSIASYQ CKPGEVISVK EKEKSKEMVK TNLQYPGLAN IPSHLEFDKN KLVGKVNGIV
EREWVALQIN ELLIVEYYSR QA