| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0199 |
|---|
| Symbol | |
|---|
| ID | 4242205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 298526 |
|---|
| End bp | 300574 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638105544 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_720161 |
|---|
| Protein GI | 113474100 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase
[COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.814117 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAATA TTATATTAGA TATTCGTAAC CTCAAAGTTC AATTTACAAC TGAAGAAAAA
CTAGTAACAG CTGTTGATGG TATATCCTTT AGGATTAAAA GAGGCCAAAC CTTAGGCATA
GTTGGAGAAT CAGGTTCTGG AAAATCTGTC ACATCTCTGG CAACTATGGG TTTACTACTG
GCGAAATCTT GCCAAATTCA GGGTGAAATT TGGTTCAATA ATTTAGCAGA AAACGCGTAC
AACTCTCAAC CAGTCAACTT ATTAGAATTA TCAGATCAGC AAAAACAACA ATACCGAGGT
GGGAAAATTT CAATGATTTT CCAAGAACCT ATGAGTTCTT TAAACCCAGT TTACACCATA
GGATTTCAAT TAACAGAAGC TATTAGATTT CATCAAAATG TTTCATTAGG AGAAGCACGA
CGTCAAGCAG TATCCCTACT TCAAGAAGTA AAGCTTCTTC CTAATGATGA GGTATTGCGA
CAAAAATGTC TAGAAGAAAT AACTGAACAT AGTCAAGACT TACTACAAGC AAAATTTAAA
CGGGGACGAG CCAAAATAGT AGATGAAGAT AGCAAACCTG CTGTTAGGCT AGGACAGGAA
AGTGAAGCTG TCGCCAGGCT CCGTCAACGC AAAATCATGG TGAAAGTAAA TCAAAAAAAG
TTAGCCATGT TAGATCGTTA CCCCCACGAA CTTTCTGGCG GTCAAATTCA AAGGGTAATG
ATAGCAATGG CAATTTCTTG CAACCCTACC TTACTAATTG CAGATGAACC GACAACAGCT
TTAGATGTTA CAGTGCAAGC AAAAATTTTA GACTTGTTAC GAGAATTGGG AAAAAGCAGA
GGAATGTCTA TTATATTTAT TTCCCATGAC TTAGGAGTAA TTTCCGAAGT AGCTGATACC
GTAGCAGTAA TGTATCAAGG GAAAATAGTT GAATATGGTG ATATTAAGCA AATATTTTCT
CAGCCACAGC ATCCTTATAC AAAAGGTTTA TTAGCTTGTA GGCCTCCTCT ACATAATAAA
GTTTTGCGTC TACCTACTGT TTCTGATTTT ATGGAAGAGG TGATCAACTC TAGTGGGGAA
ATAGAAATTC GCGAAAAAAA CACGGCAGTA GCACAACCAC AAAATCTAGA TTTGCCAGAG
AAAAAAGCAC CTCAAACAGC TAAAAATCCT ATCTTGCAAG TTAACCATTT GCGAGTCGGG
TTCCCAATAA AAGGAATGTT TGGTCAAACT CAGCGCTTAT TGATGGCAGT TAATGATGTT
TCTTTTACTG TTTCTCCTGG TGAAACTCTG GGTTTAGTAG GAGAGTCTGG TTGTGGTAAA
AGTACCTTAT CGAGAGCAAT ACTCCAACTG ATTCCAGTTA CCAGTGGGCA GGTATTTTTT
GAAGGTCAAG AAATTACAAA TTCCCAAACA GGTAAGTTAG GAATTAAGAA GTTTTTGGGA
TCGCTAAAAA ACCTTCAGTC AAAAAGTGGG AACAATTCTA ATCAAGAAAA ATATGAGCAA
ATGTTGCGAA GGTGCCGGCG GGATATGCAA ATTATTTTTC AAGATCCTTT TGGTTCACTT
GATCCTCGCT TAACAGTTGG CGCAGCTGTG ATGGAACCAA TGTTAATTCA CAGTGTAGGT
AATAGTTTTA AAGTGAGGCG CGATCGCGCA GCACATTTAT TAGAAAGGGT GGGATTAACT
GCTGACTCCT TAAGTCGCTA TCCTTATGCT TTTTCTGGGG GTCAGCGCCA ACGGATTTGT
ATTGCCCGTG CTTTGGCATT GAATCCTAAG TTAATTATCT GTGATGAGTC CGTTTCAGCC
TTAGACGTTT CAGTACAGGC ACAAGTTCTG AACCTATTAA AAGAATTACA GGATGAGTTT
GGGTTGACAT ACATTTTTAT TTCCCATGAT TTGAGTGTTG TGAAATTTAT GAGCGATCGG
ATAATGGTAA TGAAACAAGG CAAAATTGAA GAAATTGGTC TTGCCGAACA AGTTTATGAT
CAACCGCAAC GGGAATATAC ACGCCAACTT ATTGCTTCTA TTCCTATGGG AAAGACTTAT
ACCAATTAA
|
|---|
| Protein sequence | MTNIILDIRN LKVQFTTEEK LVTAVDGISF RIKRGQTLGI VGESGSGKSV TSLATMGLLL
AKSCQIQGEI WFNNLAENAY NSQPVNLLEL SDQQKQQYRG GKISMIFQEP MSSLNPVYTI
GFQLTEAIRF HQNVSLGEAR RQAVSLLQEV KLLPNDEVLR QKCLEEITEH SQDLLQAKFK
RGRAKIVDED SKPAVRLGQE SEAVARLRQR KIMVKVNQKK LAMLDRYPHE LSGGQIQRVM
IAMAISCNPT LLIADEPTTA LDVTVQAKIL DLLRELGKSR GMSIIFISHD LGVISEVADT
VAVMYQGKIV EYGDIKQIFS QPQHPYTKGL LACRPPLHNK VLRLPTVSDF MEEVINSSGE
IEIREKNTAV AQPQNLDLPE KKAPQTAKNP ILQVNHLRVG FPIKGMFGQT QRLLMAVNDV
SFTVSPGETL GLVGESGCGK STLSRAILQL IPVTSGQVFF EGQEITNSQT GKLGIKKFLG
SLKNLQSKSG NNSNQEKYEQ MLRRCRRDMQ IIFQDPFGSL DPRLTVGAAV MEPMLIHSVG
NSFKVRRDRA AHLLERVGLT ADSLSRYPYA FSGGQRQRIC IARALALNPK LIICDESVSA
LDVSVQAQVL NLLKELQDEF GLTYIFISHD LSVVKFMSDR IMVMKQGKIE EIGLAEQVYD
QPQREYTRQL IASIPMGKTY TN
|
|---|
| |