| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1713 |
|---|
| Symbol | lysA |
|---|
| ID | 4241240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | + |
|---|
| Start bp | 1937805 |
|---|
| End bp | 1939058 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638105299 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_719918 |
|---|
| Protein GI | 113461849 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.283347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTT TTCTATATAA AGATGGACAC TTAATGGCAG AAAATGTCTC TGTGAAAAAA
ATTGCAGAGC AATTTGGCAC GCCTGCTTAT ATTTATTCAC GAGCAACTCT AGAGCGTCAT
TGGTATGCTT TTGATAATGC TTTAGGAGAT CACCCTCATT TAATTTGTTT TGCTGTTAAA
TCCAATCCTA ATATAGCCAT TTTAAATATT ATGGCAAAGT TGGGATCAGG TTTTGATATT
GTGTCTCAAG GTGAACTTGA GCGAGTATTA TTTGCTGGAG GTGATCCTAA AAAAGTGGTT
TTTTCTGGTG TGGCAAAATC AGAACAAGAA ATTGCACGTG CATTGGAAGT AGGTATTCGC
TGTTTTAATG TGGAAAGTGC GGCTGAATTA ATAAGAATAA ATCAGGTTGC AAGAAAAATG
GGGAAAATTG CCTCTATTTC TTTGCGAGTA AATCCTGATG TTGATGCTCA TACTCATCCT
TATATTTCGA CTGGTCTAAA AGAAAATAAA TTCGGTGTAA GTGTTGAACA GGCTCGAGAA
GTTTATCGCC AAGCAAGTCA ATTGGAAAAT ATAAAAATTG TAGGAATAGA TTGCCATATT
GGTTCACAAC TGACAGAACT TCAACCTTTT TTAGATGCTA CAGATCGTTT AATTGTTCTT
ATGGAGCAAT TAAAAAAAGA TGGAATAACA TTAGAACACG TGGATTTAGG CGGTGGTTTA
GGGGTAACTT ATAGTGATGA GAAAGCACCA CATCCAAGTG AATATGCTAC AGCTTTGCTG
GAAAAATTAA AAAATTATCA AAATTTGGAA ATTATTTTGG AGCCAGGTAG GGCAATTACC
GCAAATGCAG GTATTTTACT CACTAGAGTG GAATATATAA AGAGTAATGA AAGTCGTCAT
TTTGCCATCG TTGATACAGG AATGAATGAT ATGATCAGAC CGGCTTTATA TCAGGCTTAC
ATGAATATCA TTGAAGTTGA CCGCACTTTG TCGAGAGAAA CTAAAGTATA TGATGTAGTC
GGTCCAATTT GTGAAACATC GGATTTTCTA GGAAAACAAC GCTCTCTTGC AATTGCACAA
GGAGATTTTA TCGTACAACG ATCAGCCGGT GCTTATGGTG CAAGTATGGC ATCAACTTAT
AATTCTCGTC CACGAGCTAT TGAAATAATG GTTGATGGAG AGCAAGTTCA TTTAATTAAA
CGTCGAGAGG AGTTTGCTGA ATTGTGGCAT TTAGAAAAAT TACTGGAAAT GTAA
|
|---|
| Protein sequence | MDFFLYKDGH LMAENVSVKK IAEQFGTPAY IYSRATLERH WYAFDNALGD HPHLICFAVK
SNPNIAILNI MAKLGSGFDI VSQGELERVL FAGGDPKKVV FSGVAKSEQE IARALEVGIR
CFNVESAAEL IRINQVARKM GKIASISLRV NPDVDAHTHP YISTGLKENK FGVSVEQARE
VYRQASQLEN IKIVGIDCHI GSQLTELQPF LDATDRLIVL MEQLKKDGIT LEHVDLGGGL
GVTYSDEKAP HPSEYATALL EKLKNYQNLE IILEPGRAIT ANAGILLTRV EYIKSNESRH
FAIVDTGMND MIRPALYQAY MNIIEVDRTL SRETKVYDVV GPICETSDFL GKQRSLAIAQ
GDFIVQRSAG AYGASMASTY NSRPRAIEIM VDGEQVHLIK RREEFAELWH LEKLLEM
|
|---|
| |