| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1564 |
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| Symbol | rpoC |
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| ID | 4241085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | - |
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| Start bp | 1762830 |
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| End bp | 1767092 |
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| Gene Length | 4263 bp |
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| Protein Length | 1420 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638105144 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_719769 |
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| Protein GI | 113461700 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TAGTTAAGTT TTTAAAAGCA CAATCAAAAA CCTCTGAAGA TTTTGATGTT
ATTAAAATTG GTTTAGCATC ACCGGATATG ATCCGTTCTT GGTCATATGG TGAGGTTAAG
AAGCCTGAAA CAATTAACTA CCGTACATTC AAACCTGAGC GTGACGGTCT TTTCTGTGCC
CGTATTTTTG GACCGGTAAA AGACTATGAG TGTCTATGCG GAAAATACAA GCGTTTGAAA
CACCGTGGAG TGATTTGTGA AAAATGCGGT GTTGAAGTAA CACAAGCCAA AGTACGCCGT
GAACGCATGG GGCATATTGA GCTTGCCTCA CCTGTTGCAC ATATTTGGTT CTTAAAATCA
TTACCGTCCC GTATTGGTTT ATTGTTGGAT ATGCCACTAC GTGATATTGA GCGTGTACTT
TATTTTGAAT CTTACATTGT TATTGAACCG GGAATGACTG ATCTTGAGAG AGGTCAATTA
TTAACGGAAG AACAATTCTT AGACGCAGAA GATCGTTGGC AGGATGAGTT TGATGCAAAA
ATGGGTGCAG AAGCAATTCA AGCCTTGTTA CGTGATATGG ATTTAGAAGT TGAATGTGAA
ACATTACGTG AAGAATTGCA ATCAACGAAT TCTGAAACTA AACGTAAGAA AATTACAAAA
CGTTTGAAAT TGTTAGAATC TTTTATCCAG TCAGGCAATA AGCCGGAGTG GATGGTGATG
ACAGTATTAC CTGTTTTACC ACCGGATCTA CGCCCATTAG TACCTCTTGA CGGAGGGCGT
TTTGCAACAT CCGATTTGAA TGATTTATAT CGTCGTGTAA TCAATCGTAA CAACCGTTTA
AAACGCCTAT TAGATTTAAT TGCACCGGAT ATTATCGTTC GTAACGAAAA ACGTATGTTA
CAAGAGTCAG TTGATGCGTT ATTAGATAAT GGTCGTCGTG GTCGTGCAAT CACCGGTTCA
AATCGTCGTC CGCTAAAATC TCTTGCGGAT ATGATTAAAG GTAAGCAAGG TCGTTTCCGT
CAGAATTTAT TAGGGAAACG TGTTGATTAC TCAGGTCGTT CCGTCATTAC AGTTGGTCCA
TACTTGCACT TACATCAATG CGGATTGCCG AAAAAAATGG CATTGGAATT ATTCCGTCCA
TTTATCTACG CTAAATTAGA AAGTCGTGGC TTTGCAACGA CTATTAAAGC TGCGAAAAAA
ATGGTTGAGC GTGAAGATGC GATTGTTTGG GATATTCTTG CCGATGTTAT TCGTGAACAC
CCAATTTTGC TCAACCGTGC ACCAACATTA CACCGTTTGG GTATCCAAGC ATTTGAGCCA
ATTCTTATTG AGGGAAAAGC TATTCAGTTG CACCCGCTGG TTTGTGCGGC ATTTAATGCT
GACTTCGATG GTGACCAAAT GGCTGTACAC GTTCCATTGA CATTAGAAGC TCAATTGGAA
GCTCGTGCAT TGATGATGTC CACAAACAAC ATTTTATCTC CGGCGAATGG TGAGCCGATT
ATTGTTCCTT CACAAGACGT TGTATTAGGT CTTTACTATA TGACACGTGA TAAAGTCAAC
GGTAAAGGCG AGGGAATGTT ATTACAAGAT TCACGTGAAG CAGAAAAAGC CTATCGTACA
GGTCAAGCTG AATTGCATTC TCGTGTAAAA GTGCGTATTA CTGAATATGT TAAAAATGCA
ATTGGTGAAT TTGAACCTCA AACACATTTA GTCGATACTA CAATTGGTCG TGCAATTTTA
TGGATGATTG CACCAAAAGG TATGCCATTT AGTTTATTCA ACCAAACTTT AGGTAAAAAA
GCGATTTCTA AATTAATCAA CGAAAGTTAT CGTCGTCTAG GATTGAAAGA GAGTGTATTG
TTTGCTGACC ATATTATGTA TACCGGTTTT GCTTATGCTG CACGTTCCGG TTCATCTGTT
GGTATTGATG ACATGGTTAT TCCTCAGAAA AAATATGAAA TTATTTCTGC TGCGGAAGAA
GAGGTTGCTG AAATTCAAGA ACAATTCCAA TCCGGTCTTG TAACAGCTGG TGAACGCTAT
AACAAAGTAA TTGATATTTG GGCTGCGGCA AACGAACGTG TTGCTAAAGC GATGATGGAA
AATCTTTCGC AAGAAGAGGT TATCAATCGT GAAGGGCAGC CGGAAAAACA AGCCTCATTC
AATAGCATCT TTATGATGGC AGATTCTGGT GCTCGTGGTT CTGCGGCACA GATTCGTCAG
TTAGCGGGGA TGCGTGGTCT AATGGCACGT CCGGATGGCT CAATCATTGA AACACCGATT
ACAGCAAATT TCCGTGAGGG TTTAAATGTA TTACAGTACT TTATTTCAAC CCACGGGGCA
CGTAAAGGTC TTGCGGATAC AGCATTAAAA ACCGCTAACT CAGGTTATCT AACCCGTCGT
TTAGTTGATG TTGCACAGGA CTTAGTGATT ATCGAAGATG ACTGTGGTAC ACATGAAGGA
ATCGTAATGA CTCCACTTAT CGAGGGTGGC GATGTAAAAG AAGCATTACG TGATCGTGTA
TTAGGTCGTG TAGCGGCAGA AGATATTTTA AAACCAGGCA CAAACGAAGT GTTAATTTCT
CGTAATACCT TATTAGATGA AAAACTTTGT GATGTCATTG ATGAAAATTC TGTTGATAGC
ATCAAAGTGC GGTCTGTTGT AACTTGCGAT ACTGATTTTG GTGTGTGTGC AAAATGTTAC
GGACGTGATT TAGCACGTGG ACATTTGATT AATCAAGGTG AAGCTGTCGG TGTTATTGCT
GCTCAATCAA TCGGTGAACC GGGTACACAG TTAACCATGC GTACATTCCA TATCGGTGGT
GCGGCATCTG CTGCGGCAAA AGAATCTAGT GTTCAAGTTA AAAATACCGG TACATTACGT
TTAACAAATG TTAAATTCGT AACGAATAAA GAAGGGAAGT TAGTTTTAAC TTCACGTAAC
ACTGAGTTGA CAATTATTGA TACATTCGGA AGAACAAAAG AGCATTATAA AGTACCTTAT
GGTGCGGTAT TAAATCATGC TGATGGTGAA GAAGTTACGG CGGGTGAAAC CGTGGCTAAT
TGGGATCCTC ATACAATGCC TGTTATTTCT GAAGTCAGTG GTTTTGTGAA GTTTGTGGAG
ATTGTTGATG GACTAACGGT AACTCGCCAA ACCGATGAAT TGACAGGGTT ATCTTCAATC
GTAGTTCAAG ATGTAGGTGA ACGTGCAACA GCAGGGAAAG ATTTACGTCC GGCATTAAAA
CTGGTTGACG CTCAAGGTAA CGATATTTTT ATCCCAGGCA CCGATGTTAT GGCACAATAT
TTCTTACCGG GTAAAGCAAT TGTTACCTTA GATGATGGTG CGGAAGTCTT TGTTGGTGAA
CCATTGGCTC GTATTCCACA AGAGTCTGTA GGAACAAAAG ATATTACCGG TGGTCTTCCT
CGTGTAGCAG ATTTATTTGA AGCACGTAAA CCAAAAGAAC CGGCAATTTT AGCTGAAATT
TCTGGTATCG TGTCTTTCGG TAAAGAAACC AAAGGTAAAC GTCGTTTGTT AATTACACCG
ATGGAAGGTG AAACATACGA AGAAATGATT CCAAAATGGC GTCAATTGAA CGTATTTGAA
GGTGAGTTGG TGCAACGTGG TGATTTAATT TCTGATGGTG CAGAAACACC ACATGATATT
TTACGTTTAC GTGGTGTACA TGCCGTAACA GATTATATCG TTAATGAAGT TCAAGAAGTT
TACCGCTTAC AAGGGGTAAA AATTAACGAT AAACATATTG AAGTTATCGT ACGTCAAATG
TTACGCAAAG CGATTATCAC TAATGCTTAT GACTCTGAAT TCTTAGAGGG AGAGCAGGTC
GAAGTCGCTA GAGTTAAAAT TGTCAACCGT AAACGTGCCG AGGAAGGTAA GCCACTTGTA
GAATTCGAAC GTGAATTATT AGGGATTACT AAAGCGTCGT TGGCAACGGA ATCCTTTATT
TCAGCGGCTT CGTTCCAAGA AACAACTCGT GTTCTAACTG AAGCGGCAGT TGCAGGTAAA
CGTGATGAAT TGCGTGGCTT AAAAGAAAAC GTGATTGTAG GTCGCTTAAT TCCTGCTGGT
ACAGGTTTTG CATATCACCA AAACCGCCAA AAAAATCGAT TGGTAGGTGG TATGGAAAAT
ACGACTGAGG TTAAATTATC TGCAGTTGAT GAGGAAGAAA TTGCTTCTGA ATTTACCTTT
TCAGCAGAAG ATGCAACAGC AAATTTGGCA GAGATGCTAA ATATGGCAGA TGATGCAGAA
TAA
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| Protein sequence | MKDLVKFLKA QSKTSEDFDV IKIGLASPDM IRSWSYGEVK KPETINYRTF KPERDGLFCA
RIFGPVKDYE CLCGKYKRLK HRGVICEKCG VEVTQAKVRR ERMGHIELAS PVAHIWFLKS
LPSRIGLLLD MPLRDIERVL YFESYIVIEP GMTDLERGQL LTEEQFLDAE DRWQDEFDAK
MGAEAIQALL RDMDLEVECE TLREELQSTN SETKRKKITK RLKLLESFIQ SGNKPEWMVM
TVLPVLPPDL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLLDLIAPD IIVRNEKRML
QESVDALLDN GRRGRAITGS NRRPLKSLAD MIKGKQGRFR QNLLGKRVDY SGRSVITVGP
YLHLHQCGLP KKMALELFRP FIYAKLESRG FATTIKAAKK MVEREDAIVW DILADVIREH
PILLNRAPTL HRLGIQAFEP ILIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLTLEAQLE
ARALMMSTNN ILSPANGEPI IVPSQDVVLG LYYMTRDKVN GKGEGMLLQD SREAEKAYRT
GQAELHSRVK VRITEYVKNA IGEFEPQTHL VDTTIGRAIL WMIAPKGMPF SLFNQTLGKK
AISKLINESY RRLGLKESVL FADHIMYTGF AYAARSGSSV GIDDMVIPQK KYEIISAAEE
EVAEIQEQFQ SGLVTAGERY NKVIDIWAAA NERVAKAMME NLSQEEVINR EGQPEKQASF
NSIFMMADSG ARGSAAQIRQ LAGMRGLMAR PDGSIIETPI TANFREGLNV LQYFISTHGA
RKGLADTALK TANSGYLTRR LVDVAQDLVI IEDDCGTHEG IVMTPLIEGG DVKEALRDRV
LGRVAAEDIL KPGTNEVLIS RNTLLDEKLC DVIDENSVDS IKVRSVVTCD TDFGVCAKCY
GRDLARGHLI NQGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASAAAKESS VQVKNTGTLR
LTNVKFVTNK EGKLVLTSRN TELTIIDTFG RTKEHYKVPY GAVLNHADGE EVTAGETVAN
WDPHTMPVIS EVSGFVKFVE IVDGLTVTRQ TDELTGLSSI VVQDVGERAT AGKDLRPALK
LVDAQGNDIF IPGTDVMAQY FLPGKAIVTL DDGAEVFVGE PLARIPQESV GTKDITGGLP
RVADLFEARK PKEPAILAEI SGIVSFGKET KGKRRLLITP MEGETYEEMI PKWRQLNVFE
GELVQRGDLI SDGAETPHDI LRLRGVHAVT DYIVNEVQEV YRLQGVKIND KHIEVIVRQM
LRKAIITNAY DSEFLEGEQV EVARVKIVNR KRAEEGKPLV EFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGFAYHQNRQ KNRLVGGMEN
TTEVKLSAVD EEEIASEFTF SAEDATANLA EMLNMADDAE
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