| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1540 |
|---|
| Symbol | hemE |
|---|
| ID | 4241061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | - |
|---|
| Start bp | 1737121 |
|---|
| End bp | 1738185 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638105120 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_719745 |
|---|
| Protein GI | 113461676 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0588582 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTCT TGAAAAATGA GCGTTACTTA AAAGCATTAT TGCGTGAACC TGTGGATATG
ACGCCCGTTT GGATGATGCG TCAAGCCGGA CGTTATTTAC CGGAATATAA AGCAACTCGT
GCAAAAGCAG GGGATTTTAT GTCCCTTTGC CGTAATGCCG ATTTAGCGTG TGAAGTGACT
TTGCAACCTT TACGTCGCTA TGATCTGGAT GCTGCTATTT TATTTTCGGA TATTCTGACT
ATCCCTGATG CCATGGGGTT GGGATTGAGT TTTGGTGTGG GCGAAGGTCC TAAATTTGCA
CGACCAGTTG AGAACAAAAG TGCGGTACAA AATCTTCCGA TTCCCGACCC TGAACAAGAG
TTACAGTATG TGATGAATGC GGTGCGTACT ATTCGTCGTG AGTTAAAAGG TGAAGTTCCT
CTTATCGGTT TTTCCGGAAG TCCTTGGACT TTAGCAACCT ACATGGTTGA AGGCGGAAGC
AGTAAAGCCT TTACTAAAAT CAAAAAAATG ATGTATTCCG AGCCAAAAAT ATTGCATCTG
TTATTGGATA AGTTAGCAGA CGCCGTGATA CTTTATCTTA ATGCACAAAT TAACGCTGGC
GTGCAGGCGG TGATGGTTTT CGATACGTGG GGCGGTGTAT TGGGACATCG TGAATATTTG
GATTTCTCAT TGCAATATAT GCACAAAATT GTTGATGGCT TAATTCGTGA AAATGACGGA
TATAAAGTGC CAGTTACTTT GTTTACGAAA GGTGGTGGTT TGTGGTTAGA GGCAATGGCA
AGTACGGGGT GTGATGCACT AGGTTTAGAT TGGACGGTAA ATTTAGCAGA GGCAAAAGCA
CGAGTTGGGC ATAAAGTTGC GTTACAAGGA AATATGGATC CTTCCGTATT ATATGCTTCG
CCTGCACGAA TTGAGCAGGA AGTACAACAA ATTCTTGCCG ATTTTGGACA AGGTAGCGGA
CATGTGTTTA ACTTAGGACA TGGTATTCAT CAAGATGTTC CGGAAATTAG TCCGAAGGTT
TTTGTGGATG CTGTTCATCA ATATTCAGTA TCCTATCATC AATAA
|
|---|
| Protein sequence | MTVLKNERYL KALLREPVDM TPVWMMRQAG RYLPEYKATR AKAGDFMSLC RNADLACEVT
LQPLRRYDLD AAILFSDILT IPDAMGLGLS FGVGEGPKFA RPVENKSAVQ NLPIPDPEQE
LQYVMNAVRT IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKAFTKIKKM MYSEPKILHL
LLDKLADAVI LYLNAQINAG VQAVMVFDTW GGVLGHREYL DFSLQYMHKI VDGLIRENDG
YKVPVTLFTK GGGLWLEAMA STGCDALGLD WTVNLAEAKA RVGHKVALQG NMDPSVLYAS
PARIEQEVQQ ILADFGQGSG HVFNLGHGIH QDVPEISPKV FVDAVHQYSV SYHQ
|
|---|
| |