| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1323 |
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| Symbol | prtC |
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| ID | 4240835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | - |
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| Start bp | 1512910 |
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| End bp | 1514286 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638104897 |
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| Product | collagenase prtC |
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| Protein accession | YP_719535 |
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| Protein GI | 113461466 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.768171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACTC AATTCAAACC GGAATTATTA TCTCCAGCCG GTTCGTTAAA AAATATGCGT
TATGCTTTTG CTTATGGTGC AGATGCCGTA TATGCCGGTC AACCTCGATA TAGTTTGCGA
GTTCGCAACA ATGAATTTAA TCATGCTAAT TTAAAAATCG GTATTGATGA AGCACATGCA
CTTGGTAAAA AATTCTATGT TGTAGTGAAT ATTGCACCAC ATAATTCTAA ATTAAAAACC
TTTATCAAAG ATTTACAACC CGTGATTGAT ATGCAACCTG ATGCACTAAT CATGTCAGAC
CCTGGCTTGA TTATGTTGGT TCGTGAGCAT TTCCCAAATA TTGATATTCA TCTTTCTGTA
CAAGCAAATG CAGTGAATTG GGCGACAGTG AAATTCTGGA AACAATTGGG TTTAACTCGA
GTGATTCTAT CTCGTGAACT CTCCTTGGAA GAAATCGCTG AAATTCGCCA GCAAGTACCG
GATATTGAAG TTGAAATATT TGTGCATGGT GCTTTATGTA TGGCATATTC AGGACGCTGT
TTATTATCAG GCTATATTAA CAAGCGTGAT CCCAATCAAG GTACTTGTAC CAATGCCTGT
CGCTGGGAAT ATTCTGTTGT AGAAGGAAAA ACAGATGAAG TAGGCAACAT TGTGAATGTT
GGTGAAGAAA TTCCCGTTAA AAATGTCGCA CCGACGTTAG GTGAAGGAAA TACAACAAAT
AAAGTCTTTT TATTAGCGGA AAATCAGCGA CCTGAAGAGC AAATGTCAGC CTTTGAAGAT
GAGCATGGTA CTTATATTAT GAACTCTAAA GATCTGCGTG CAGTGCAACA TGTAGAAAAA
CTTTCACAAA TTGGTGTTCA TTCTTTAAAA ATTGAAGGGC GTACAAAATC TTTCTATTAT
TGTGCAAGGA CGGCTCAAGT TTATCGCAAG GCTATTGATG ACGCAGTAGC AGGCAGACCT
TTTGATGAAA GTTTAATGGA TACATTGGAA AGTTTGGCAC ATCGTGGCTA TACAGAAGGT
TTCTTACGCC GTCATACGCA TGATGAATAC CAAAATTATG ATTATGGGTA TTCTATTTCT
GAACGCCAAC AATTTGTCGG AGAATTTACC GGTAAACGTA ATGAACAAGG TATGGCGGAA
GTTGCGGTTA AAAATAAATT CTTGTTAGGT GATGAAGTTG AATTAATGAC GCCCAAAGGC
AATGTGGTTT TTACCATTGA GCGTATGCTT AATCGTAAAA ATGAACACAT TGATGCCGCA
CTTGGTGATG GGCATTTTGT TTTTTTAGAT GTTCCTCAAG ATATTCAACT TGATTATGCG
TTACTCATGC GTAATTTAGT TAATGCAAAT ACAAGAAATC CACATAATAA AAAATAA
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| Protein sequence | MTTQFKPELL SPAGSLKNMR YAFAYGADAV YAGQPRYSLR VRNNEFNHAN LKIGIDEAHA
LGKKFYVVVN IAPHNSKLKT FIKDLQPVID MQPDALIMSD PGLIMLVREH FPNIDIHLSV
QANAVNWATV KFWKQLGLTR VILSRELSLE EIAEIRQQVP DIEVEIFVHG ALCMAYSGRC
LLSGYINKRD PNQGTCTNAC RWEYSVVEGK TDEVGNIVNV GEEIPVKNVA PTLGEGNTTN
KVFLLAENQR PEEQMSAFED EHGTYIMNSK DLRAVQHVEK LSQIGVHSLK IEGRTKSFYY
CARTAQVYRK AIDDAVAGRP FDESLMDTLE SLAHRGYTEG FLRRHTHDEY QNYDYGYSIS
ERQQFVGEFT GKRNEQGMAE VAVKNKFLLG DEVELMTPKG NVVFTIERML NRKNEHIDAA
LGDGHFVFLD VPQDIQLDYA LLMRNLVNAN TRNPHNKK
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