Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HS_1313 |
Symbol | secD |
ID | 4240825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haemophilus somnus 129PT |
Kingdom | Bacteria |
Replicon accession | NC_008309 |
Strand | - |
Start bp | 1503374 |
End bp | 1505224 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638104887 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_719525 |
Protein GI | 113461456 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.198401 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAAATC GTTACCCTTT ATGGAAGAAT CTAATGGTGA TCCTAGTGAT CGCCATTGGT GTTTTATATT CTCTTCCAAA TCTTTACGGT GAAGATCCAG CTGTACAAAT CTCTGGAACA CGAGGGCAAA CCGCTGATAT AAACGTGCTT ACTAATGTAC AAACATTATT AGAGCAAAAT AATTTACCTA TCAAATCAAT TATTTTGGAA AACGGCTCAA TTTTAGCTCG TTTCAACAAT ACAGATGATC AACTTTTAGC TAAAGATAAA ATTATTGAAC AACTTGGTAA TAATTATTCC GTTGCACTTA ACCTTGCACC CGCCACACCA AAATGGTTAA CCAATATTGG TGGTAGACCG ATGAAATGGG GGTTAGACCT ACGGGGAGGT GTTCGTTTCT TAATGGAAGT GGATATGCAC ACTGCATTGG ATAAACGCCA AGAACAATTA CAAGACAGCT TACGTACCGA ATTACGCAAA GAAAAATATC AATATACGTC TATTCGTAAT GGAGAAAATT TTACAACTCT CATTACCTTA GCTAAACCGG AACAACTTTC CGATGTACAA CGTTTCTTGC GTAAACAACA TCAAAATCTG AACGTTAATG CCATTTCTGA AAACACACTA AGTTTAGAAT TATCAGAGAA CGCTCTAAGA GAAATTCGTG ATCATGCTAT TGAACAAAAC TTAAGTATTT TACGTCGTCG TGTAGAAGAA TTGGGTGTTG CTGAACCTGT TATTCAGCGT CAAGGGGCTG AGCGTATTGT AGTGGAATTA CCCGGTGTAC AGGATACAGC TCGGGCAAAA GAAATTCTAG GTGCAACAGC AACGCTGGAA TTCCGTTTAG TAAATCAAAA TGCAAATTTA GATGTCGCTC TTAGAGGTAT GGTGCCTTCT GATTCGGAAG TGAAATATGA TCGCAATGGT AGTCCTATTG TGTTATATCG ACGAGCTGTA TTAGGCGGTG AGCATATTAC TAATGCAAGT TCAGGCATAG ATCAAAATAC CGGTTCTCCT CAGGTTTCGG TTACTTTAGA TTCTGAAGGT GGTGAAATTA TGTCACAAAC TACCAAACTT AATCTAAAGA AACCAATGGC AACTTTATAT GTAGAATATA AAGACAGTGG TAAAAAAGAC GAACATGGTA AAACTATTTT AGCTAAACAT GAAGAAGTTA TTAATGTTGC GACAATCCAA GGTCGTTTCG GTTCACAATT CCAAATTACC GGCATCAATA GCCCTGCTGA AGCACAAAAC CTAGCGGTAT TACTACGTTC AGGTGCTTTA ACTGCACCAA TTCAAATTAT TGAAGAGAGA ACGGTAGGCC CATCTTTGGG GGCTCAAAAC GTTGAACAAG GGCTGAAAGC AGGATTATGG GGATTAGCCA TTACGATTAT ATTTATTCTA TTTTACTATA AACTCTTCGG TTTATTTGCC AGCATAGCCC TTATTGCTAA TATGGTACTT CTTGTAGGCA TAATGTCTTT ATTACCTGGA GCGACTTTAA CAATGCCGGG TATCGCAGGG ATTGTTTTAT CTGTCGGTAT GTCTGTTGAT GCTAATGTAT TGATTTTTGA ACGAATAAAA GAAGAAATTA ATAATGGTCG CACAATTCAG CAAGCTATTA ATGAAGGTTA TAGCGGTGCA TTTACGAGTA TTTTTGATGC GAACTTAACC ACTATTCTAA CATCAGTCGT ATTATATGCT GTAGGTACTG GACCGGTTAA AGGGTTTGCT ATTACACTCT CTTTAGGTGT AGCGATTTCA ATGTTTACTG CCATTACAGG AACTCGTTTT CTTGTAAACT TAATCTATGG TGGAAAACGT GTTGAAAAAT TATCAATTTA A
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Protein sequence | MLNRYPLWKN LMVILVIAIG VLYSLPNLYG EDPAVQISGT RGQTADINVL TNVQTLLEQN NLPIKSIILE NGSILARFNN TDDQLLAKDK IIEQLGNNYS VALNLAPATP KWLTNIGGRP MKWGLDLRGG VRFLMEVDMH TALDKRQEQL QDSLRTELRK EKYQYTSIRN GENFTTLITL AKPEQLSDVQ RFLRKQHQNL NVNAISENTL SLELSENALR EIRDHAIEQN LSILRRRVEE LGVAEPVIQR QGAERIVVEL PGVQDTARAK EILGATATLE FRLVNQNANL DVALRGMVPS DSEVKYDRNG SPIVLYRRAV LGGEHITNAS SGIDQNTGSP QVSVTLDSEG GEIMSQTTKL NLKKPMATLY VEYKDSGKKD EHGKTILAKH EEVINVATIQ GRFGSQFQIT GINSPAEAQN LAVLLRSGAL TAPIQIIEER TVGPSLGAQN VEQGLKAGLW GLAITIIFIL FYYKLFGLFA SIALIANMVL LVGIMSLLPG ATLTMPGIAG IVLSVGMSVD ANVLIFERIK EEINNGRTIQ QAINEGYSGA FTSIFDANLT TILTSVVLYA VGTGPVKGFA ITLSLGVAIS MFTAITGTRF LVNLIYGGKR VEKLSI
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