Gene HS_1310 details

Gene Information

• Locus tag: HS_1310
• Symbol: topB
• ID: 4240821
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: +
• Start bp: 1499439
• End bp: 1501337
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 638104883
• Product: DNA topoisomerase III
• Protein accession: YP_719522
• Protein GI: 113461453
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00570993
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATTAT TTATAGCGGA AAAACCCAGC CTTGCTCGAG CTATTGCTGA CGTATTGCCT 
AAACCGCATC AACGTGGACA AGGCTTTGTC AAATGTGGCG AACAAGATTA TGTAACTTGG 
TGTGTAGGAC ATTTATTGGA ACAAGCTGCT CCTGATGTTT ACAATCCAAT GTTCAAACAA 
TGGCGTTTAG AACATTTACC TATTATTCCG CAAAAATGGC TATTACTTCC CAGACAAGAA 
GTAAAAAGTC AGCTGGACAT TGTACTTAAA TTAATTCATC AAGCAGACAT TATAATTAAT 
GCTGGGGATC CGGATCGAGA AGGGCAATTA TTAGTTGATG AAGTTTTCAG TTATGCCAAG 
TTGCCTGCTA CAAAATTAGC CGAAATTCAA CGTTGTCTAA TTAACGATCT CAATCCAAGT 
GCGGTAGAAA AAGCAATAAA AAAATTACAG CCTAACAAAA ATTTTATCCC CCTTGCTACA 
TCAGCATTAG CACGTTCAAG AGCAGATTGG TTATATGGCA TTAATATGAC CCGAGCCTAC 
ACTATTCGTG GTCGTCAATC AGGCTATAAC GGTGTTCTAT CCGTTGGCCG AGTGCAGACA 
CCTGTCTTGG GATTAATTGT ACGTCGTGAT TTAGAAATTG AGCATTTTCA ACCGAAAGAT 
TTTTTTGAGG TTCAAGCCTT TATTGCAACA AAAGAAAAAA TGCCCTCAAC ATTTACCGCA 
CTTTGGCAAC CGAGTAAAGC CTGTGAAGAT TATCAAGATG AAGAAGGACG GGTGTTATCC 
AACGCTTTAG CTAAAAATGT AGTAAAACGC ATTACCGCAC AGCCAGCAAC GGTGACAGAA 
TATATTGATA AAAGAGAAAA AGAAACCGCC CCTTTGCCTT ATTCACTTTC TGCATTACAA 
ATAGATGCAG CGAAACGTTA TGCCATGTCT GCACAAGAGG TTTTAGATGT TTGTCAAAAA 
TTATACGAAA CCCATAAATT AATCACTTAC CCACGTTCCG ATTGTCGCTA TTTGCCTGAA 
GAACATTTTT CCGCACGACA TACTATTTTA CGTGCAATTT CCACACACAG TATTTTATAT 
AAAGAAATTC CCGATATAGT TAATACTGAG CTGAAAAATC GTTGTTGGAA CGATAAAAAA 
GTAGAAGCAC ATCATGCCAT TATCCCAACG GCAAAAAATA AAACTGTGTC TTTAAGCCAA 
AATGAACAAC AAATCTATGA TTTAATTGCT CGCCAATACT TAATGCAATT TTGTCAAGAG 
GCTGAATATC GAAAAAGTAA AATTACATTA GATATTGCTG GGGGAACTTT TATTGCTCAA 
GCGAGAAATT TACAAATTGC GGGCTGGAAA CAACTTTGGG GAAAAGAGGA TGAAGATGAA 
CAACAAGAAC CTTTGCTTCC TATTGTGAAA AAAGGTGATG AATTATTTTG TGAAAAAGGT 
GATGTAATTA GCAAAAAAAC ACAACCGCCA AAACCTTTTA CCGATGCAAC CTTACTTTCG 
GCAATGACGG GAATCGCACG TTTTGTACAA AATAAAGAAT TGAAAAAAAT CTTACGTGAA 
ACAGATGGTC TAGGTACGGA AGCAACAAGA GCAGGCATTA TTGAATTATT ATTTAAGCGA 
GGATTCATCT ATAAAAAAGG GCGGAATATT CACAGTACAG AAACAGGCAG AACACTCATT 
CAAGCCTTAC CAGAAATCGC AACTCAGCCG GATATGACCG CACATTGGGA AGCTCAACTG 
GACAGCATTA GCCGCAGGCA AGGATCCTAT CAACAATTTA TGCAAACGCT CAGTGAACTT 
TTACCTGAAT TATTAGGTTA CTTTAATTTT TCCGCACTGC GGAAACTAGG ACTTCAAACG 
AAAGAGAATA AAAAAGCAGA TTTGAAAAAA AATGAGTAA 

 

Protein sequence

MRLFIAEKPS LARAIADVLP KPHQRGQGFV KCGEQDYVTW CVGHLLEQAA PDVYNPMFKQ 
WRLEHLPIIP QKWLLLPRQE VKSQLDIVLK LIHQADIIIN AGDPDREGQL LVDEVFSYAK 
LPATKLAEIQ RCLINDLNPS AVEKAIKKLQ PNKNFIPLAT SALARSRADW LYGINMTRAY 
TIRGRQSGYN GVLSVGRVQT PVLGLIVRRD LEIEHFQPKD FFEVQAFIAT KEKMPSTFTA 
LWQPSKACED YQDEEGRVLS NALAKNVVKR ITAQPATVTE YIDKREKETA PLPYSLSALQ 
IDAAKRYAMS AQEVLDVCQK LYETHKLITY PRSDCRYLPE EHFSARHTIL RAISTHSILY 
KEIPDIVNTE LKNRCWNDKK VEAHHAIIPT AKNKTVSLSQ NEQQIYDLIA RQYLMQFCQE 
AEYRKSKITL DIAGGTFIAQ ARNLQIAGWK QLWGKEDEDE QQEPLLPIVK KGDELFCEKG 
DVISKKTQPP KPFTDATLLS AMTGIARFVQ NKELKKILRE TDGLGTEATR AGIIELLFKR 
GFIYKKGRNI HSTETGRTLI QALPEIATQP DMTAHWEAQL DSISRRQGSY QQFMQTLSEL 
LPELLGYFNF SALRKLGLQT KENKKADLKK NE