Gene HS_1197 details

Gene Information

• Locus tag: HS_1197
• Symbol: pilF
• ID: 4240698
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 1352713
• End bp: 1353252
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 638104760
• Product: fimbrial biogenesis and twitching motility protein
• Protein accession: YP_719409
• Protein GI: 113461340
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF
• TIGRFAM ID: [TIGR02521] type IV pilus biogenesis/stability protein PilW

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.27638
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGATATC GGACTATATT TACTTTTATT ATATTCTCTC TTTTTCTTTC TGCTTGCGTT 
TCTCAGCCTA CAACTGTTCG CTTTAATAAG CAACAAGCTG CAAAAGCACG AATTGAGTTA 
GGTTTAGGTT ATTTAAAATT ACGCAATTTT TCTCAAGCAA AACGTAATTT TGATAAAGCT 
TTATTCTATC AACCTGACTA TTATTTGGTA CATTCGGCTT TTGCCTATTT ATATCAATTG 
CAAGGTGATA TTTCACAAGC GAAATCCTCT TATGAAAAAG CTATCAGTTT GGATAAGTCG 
CAAGGTGATG TGAAAAATAA TTATGGTGCA TTTTTATGTA GTCAGGGCGA ATTTGCTCGT 
GCTTATGAGT TATTTGAGCA GGCACTTACT ACGCCTAATT ATTACCAGCA AGCGAATACC 
TATGCAAATA TCATAATTTG TGCAGAGGCG GAACATAATA TTCCACGTTA TCAGAAATTT 
TTACAGTTAC TGAAGAATAT TGATCCCAAA AGAGCGGAGG AAATAAAGAA AGTTTCTTAG 

 

Protein sequence

MRYRTIFTFI IFSLFLSACV SQPTTVRFNK QQAAKARIEL GLGYLKLRNF SQAKRNFDKA 
LFYQPDYYLV HSAFAYLYQL QGDISQAKSS YEKAISLDKS QGDVKNNYGA FLCSQGEFAR 
AYELFEQALT TPNYYQQANT YANIIICAEA EHNIPRYQKF LQLLKNIDPK RAEEIKKVS