| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1161 |
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| Symbol | mfd |
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| ID | 4240662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | - |
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| Start bp | 1311475 |
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| End bp | 1314906 |
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| Gene Length | 3432 bp |
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| Protein Length | 1143 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638104724 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_719373 |
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| Protein GI | 113461304 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTTTA ATTTTGACAT ACCTACCCAG CCCAATGAGC ATAAACTTCT AGGTAATGTA
TTACAGGGGG CTGATAGTCT TGTGATTGCA GAAATTGTAC GGCGATATGA TGGGTTGATT
TTTGTTATGA CCCCTGATGT TAAAAGTGCG GTCTGTTTAG AAAAATTTTT AACTGAATTC
ACTCAACAAC CTGTTACATT TTTTCCTGAT TGGGAAACTT TACCCTACGA TAATTTTTCG
CCACATCAAG AAATTATTTC AGCTCGCTTA AGTGCCTTGT TTCAGTTGCA ACATAGCAAC
AAAGGTATCT TTATTGCACC AATTACGACT GTAATGCAAC GAGTTTGTCC GGCAGAATTT
TTACAACACA ATGTATTATT GATAAAACGA GGTGATCGAT TAAATATCGA AAGATTTCGT
TTACAGCTGG AAAATGCCGG TTATCGAGCA GTCGAACAAG TACTGGAACA TGGCGAATTT
GCAGTACGAG GTGCTTTATT GGATTTATTT CCGATGGGAA GTGCGGTGCC TTTTCGATTG
GATTTTTTTG ATGATGAAAT TGATAGTATT CGTACTTTTG ATGTAGATAC GCAGCGTACA
TTAGAAGAAA TTCAACGTAT TAATTTATTA CCTGCACAAG AGTTCCCAAC AGATAGAAAA
GGTATTGACT TTTTTCGTAG TCAATTTAGA GAAACTTTTG CGGAAATTAG ACGAGATCCT
GAACATATTT ATCAACAAAT CAGTAAAGGA ACTCTAGTTT CCGGAATCGA ATATTGGCAA
CCGCTCTTTT TTAATCAAAT GGCGACGTTG TTTGATTACA TACCTGACAA TACGTTGTTT
GTGGATTTTG AACAAATTAT GCCACAAGCG GAACGTTTTT ATCAGGATAT TGAGCAACGT
TATGAAAGCC GTCGTGTTGA TCCGATGCGT CCGTTACTGA TGCCGGAAAA ATTGTGGTTA
CGCATTGATG AAGTTAATCG GCAGTTAAAA AATTATCCAA GATTGAGTTT AAAAAGCAAA
AAATTTGATC GTTCCTCTGT TCGTCAGAAA AATTTGCCTG TGCAGCTGTT GCCGGAATTA
ACCGTTCAAG TACAACAAAA AGAACCTTTG CAAAAATTGC GTCAGTTTAT TGAGGAATTT
GACGGAACTG TTATTTTTTC AGTAGAAACA GAAGGGCGTC GGGAAACATT ATTGGATTTA
CTCTTACCTT TAAAGCTCAA ACCAACGCAA ATTCAGGATT TGAGTGAAAA AGATAAGCCA
CCTAAAAGCC TGCTCATCAG TAGTTTAGAA CATGGATTTA TTATTGATAA TGAGGATAAG
GTTGCCATTA TTTGTGAAAC TGAATTATTG GGAGAGCGAG TGCAACAACG TGAGCGTAAT
AAACGTAGAG TTGCCAATCC CGATACACTC ATTCGCAATC TTGCCGAATT AAAAATAGGA
CAACCTGTTG TGCATTTAGA GCATGGTGTT GGACGCTATG GTGGATTGGT GAGTTTAGAA
AATGGTGGAA TTAAAGCTGA GTTTTTATTA TTGGAATATG CGAATAATTC AAAACTTTAT
GTACCCGTTA CCTCTTTGCA TTTAATTAGT CGCTATGTTG GCGGATCTGA TGAAAATGCA
CCTTTACATA AACTTGGTAA TGATAGTTGG GCAAAGGCTC GACATAAGGC GATAGAAAAA
ATTCGTGATG TTGCTGCTGA ACTGCTGGAT GTTTATGCTC AACGTGAAGT TAAAAAAGGC
TTTGCATTTC AATATGATAA AGAAGAATTT AAACAATTTG CTGCCACGTT TCCTTTTGAA
GAAACACCCG ATCAAAAAAT GGCAATTAAT GCGGTTATTT CTGATATGTG CCAAGAAAAA
GCTATGGATC GTTTAGTTTG TGGTGATGTG GGGTTTGGTA AAACGGAAGT GGCAATGAGA
GCGGCATTTT TAGCCGTGAT GAACCATAAA CAAGTAGCGG TTTTGGTTCC TACGACTTTA
TTGGCACAGC AACATTATGA AAATTTTAAA GATCGATTTG CCAATCTGCC GGTTAATGTC
GAAATGTTGT CACGTTTTAG AACGGCAAAA GAGCAGAAAC AAATTTTACA ACACTTGAAT
GAAGGTAAAA TTGATATTTT AATCGGTACG CATAAATTAA TTCAGTCAGA AGTAAAATTC
AGCGATCTCG GTTTGCTCAT TATTGATGAA GAACATCGTT TCGGAGTGAG CCAAAAAGAG
AAAATCAAAC AGCTACGAAC CAATATTGAT ATTTTAACCC TAACGGCAAC ACCTATTCCT
CGAACATTAA ATATGGCGAT GAGTGGCATC CGTGATTTAT CAATTATTTC CACACCGCCA
GCTCGGCGAT TGAGCATAAA GACCTTTGTA AGACAGGTAG ACGATTTGAT TATTCGAGAA
GCCGTGTTGC GTGAAATTTT ACGGGGAGGA CAGGTTTATT ATTTACATAA TGATGTGGCA
AGTATTGAAA ATTGTGCAGA AAAACTGACC GCACTTGTAC CGGAAGCGAG AGTGGTTGTT
GGGCATGGGC AAATGCGAGA AAGAGAGTTG GAGCGTGTAA TGTCCGATTT TTATCATCAG
CGTTTTAATG TACTGGTTTG CTCTACTATT ATTGAAACAG GGATTGATGT CCCAACGGCT
AACACGATTA TTATTGAACG GGCGGATAAT TTTGGATTAG CCCAATTACA TCAGCTGAGA
GGAAGAGTTG GACGTTCTCA TCATCAGGCA TATGCTTATT TGTTGACACC TCATCCAAAA
GCAATGACCA AAGATGCCGT TAAGCGTTTA GAGGCACTGG AAAGTTTAGA TAATTTAGGT
GCCGGATTTA TTTTGGCTAC CCATGATTTA GAAATTAGGG GAGCTGGTGA ATTGCTCGGA
AATGAGCAAA GCGGTCAAAT TGAAAGTATC GGTTTTTCGC TTTATATGGA ATTATTGGAA
AATGCTGTTG CTGCATTAAA AGAAGGGCGA GAACCTTCTT TGGATACTTT AACACAACAG
CAAGTAGAGA TTGATTTACG TGTACCCGCA TTATTACCGG AAGAATATCT TGGTGATGTG
AATATGAGAT TATCTTTTTA TAAACGGATT GCCGGAGCGG AAAATCAGGC AGAGTTAGAT
GAATTGAAAG TAGAGTTGAT TGATCGTTTT GGCTTATTAC CGGAGGCAGG TAAGAATTTA
ATGCAAATTG CTGAGTTGCG TTTGCTGGCA AAAACCTTAA AAATTGTCAA AATTGATAGC
ACAATTAATG GGGGATTTAT TGAGTTTTCT GAAAATGCAG AACTTGATCC GATGAAATTT
GTGCAATTAA TTCAGTCTCA GCCTACTGTA TTTAAATTTG ACGGACCGAC TAAGTTTAGG
TTTAGTAAGT CATTGACGTC ACATAAAGAG CGGTTGGAAT TTGTGAAAAA TTTAGTTGGG
AATTTAGCTT AA
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| Protein sequence | MYFNFDIPTQ PNEHKLLGNV LQGADSLVIA EIVRRYDGLI FVMTPDVKSA VCLEKFLTEF
TQQPVTFFPD WETLPYDNFS PHQEIISARL SALFQLQHSN KGIFIAPITT VMQRVCPAEF
LQHNVLLIKR GDRLNIERFR LQLENAGYRA VEQVLEHGEF AVRGALLDLF PMGSAVPFRL
DFFDDEIDSI RTFDVDTQRT LEEIQRINLL PAQEFPTDRK GIDFFRSQFR ETFAEIRRDP
EHIYQQISKG TLVSGIEYWQ PLFFNQMATL FDYIPDNTLF VDFEQIMPQA ERFYQDIEQR
YESRRVDPMR PLLMPEKLWL RIDEVNRQLK NYPRLSLKSK KFDRSSVRQK NLPVQLLPEL
TVQVQQKEPL QKLRQFIEEF DGTVIFSVET EGRRETLLDL LLPLKLKPTQ IQDLSEKDKP
PKSLLISSLE HGFIIDNEDK VAIICETELL GERVQQRERN KRRVANPDTL IRNLAELKIG
QPVVHLEHGV GRYGGLVSLE NGGIKAEFLL LEYANNSKLY VPVTSLHLIS RYVGGSDENA
PLHKLGNDSW AKARHKAIEK IRDVAAELLD VYAQREVKKG FAFQYDKEEF KQFAATFPFE
ETPDQKMAIN AVISDMCQEK AMDRLVCGDV GFGKTEVAMR AAFLAVMNHK QVAVLVPTTL
LAQQHYENFK DRFANLPVNV EMLSRFRTAK EQKQILQHLN EGKIDILIGT HKLIQSEVKF
SDLGLLIIDE EHRFGVSQKE KIKQLRTNID ILTLTATPIP RTLNMAMSGI RDLSIISTPP
ARRLSIKTFV RQVDDLIIRE AVLREILRGG QVYYLHNDVA SIENCAEKLT ALVPEARVVV
GHGQMREREL ERVMSDFYHQ RFNVLVCSTI IETGIDVPTA NTIIIERADN FGLAQLHQLR
GRVGRSHHQA YAYLLTPHPK AMTKDAVKRL EALESLDNLG AGFILATHDL EIRGAGELLG
NEQSGQIESI GFSLYMELLE NAVAALKEGR EPSLDTLTQQ QVEIDLRVPA LLPEEYLGDV
NMRLSFYKRI AGAENQAELD ELKVELIDRF GLLPEAGKNL MQIAELRLLA KTLKIVKIDS
TINGGFIEFS ENAELDPMKF VQLIQSQPTV FKFDGPTKFR FSKSLTSHKE RLEFVKNLVG
NLA
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