Gene HS_1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHS_1080 
Symbol 
ID4240580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaemophilus somnus 129PT 
KingdomBacteria 
Replicon accessionNC_008309 
Strand- 
Start bp1197680 
End bp1198321 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content31% 
IMG OID638104642 
Producthypothetical protein 
Protein accessionYP_719292 
Protein GI113461223 
COG category[R] General function prediction only 
COG ID[COG3683] ABC-type uncharacterized transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACAAT TCATTCGTTT AATCGGGATT ATTCTTGGTT TTTTGCCTAT ATACAGTTTA 
GCTCACCCAC ACGCTTTTAT TGAAATGCAG ACAAAACCCA TTATTGACAA GCAAAAATTA 
GTTGGTTTTT CTATGCAATG GATTTTAGAT GAATCAAGTT CATCTGCGGT TTTATATGAT 
TTGGCTTTTT TGCAAGATGA TCAAAAAGAA TTACAAAAAT TTATTGATGA TATGATCCAA 
AATGTTGTTA ATGAACATTA TTTTAGTTAT TTGTATGATA AGAAAGGAAA TAAAATTAAG 
TATTCTGCAA TTCCTCAAAA CTATGGATTA AAATCTAACG GTGCACAGGT TTTATATTTT 
TTTGATTTTT TATTAGCTAA ACCTCAGGAG TTATCCAATA ACCGTTTTGA ATTATCTACT 
TATGATTCAA CCTACTATGT ATCTATGTAT TACGATAAAG ACAAGGAGAA AAGTGCGGTA 
GATTTTTCGT CACTTCCGCA ACATTGTCAA GGAAATGTTG TCGAACCTCA AGTTGATCAA 
AAATTACGAG AATATGCGGC CTCTTTAGAT CGTAACCAAC GTGATGAAGA CAGCTCGTTA 
GGCGTTATAT TTGCACAAAA AGTAGTTATC CAATGTCAAT AA
 
Protein sequence
MQQFIRLIGI ILGFLPIYSL AHPHAFIEMQ TKPIIDKQKL VGFSMQWILD ESSSSAVLYD 
LAFLQDDQKE LQKFIDDMIQ NVVNEHYFSY LYDKKGNKIK YSAIPQNYGL KSNGAQVLYF 
FDFLLAKPQE LSNNRFELST YDSTYYVSMY YDKDKEKSAV DFSSLPQHCQ GNVVEPQVDQ 
KLREYAASLD RNQRDEDSSL GVIFAQKVVI QCQ