Gene HS_1049 details

Gene Information

• Locus tag: HS_1049
• Symbol: degS
• ID: 4240547
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 1156362
• End bp: 1157408
• Gene Length: 1047 bp
• Protein Length: 348 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 638104610
• Product: DegS serine peptidase
• Protein accession: YP_719261
• Protein GI: 113461192
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
• TIGRFAM ID: [TIGR02038] periplasmic serine pepetdase DegS

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0146114
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAAAA AATTAATTCA ATCAATAATC ACTGGGTTAG CTGCCGCAGC ATTGGTGTTA 
CTTATATTGC CTGTTTTCAA GGGAAATGGG TATTTGACAA ATATTTTTTT TATACAAAAA 
GATATTCTTT CTTATAAAGA TGCTGTACGT ATTGCTTCAC CGGCGGTAGT TAATGTTTAT 
AATCAAGCTT TTGTATTTAC AACCAATAAT TACCAACCAC AAATTAATAA TTTGGGTTCC 
GGTGTTATTA TGTCAAAAGA TGGTTATATA TTGACTAATG AGCATGTTGT TCAAAATGCG 
GATCAAATTG TGGTGGCATT ACAAAATGGA CGTATTTTTG AAGCGAATTT AGTGGGGTCG 
GATCGCTTGA CAGATTTAGC GGTTTTAAAA ATTCATGCAG ATAATCTGGC AACCATTCCA 
CAAAATCCAA AACGTCAAGC TCATGTCGGT GATGTCGTTT TATCTATTGG GAATCCCTAT 
AACCTAGGTC AAAGTGTGTC GCAAGGTATT ATTAGTGCGT TGGGTCGTAA TGCTGTTGGC 
GATTTCATTG GACGACAAAA TTTTATTCAA ACGGATGCCC CTCTTAATCG TGGTAATTCC 
GGTGGGGCAC TCATTAATTC TGCTGGTGAA TTGATTGGTA TAAGTACGTT AAGTATTGGT 
AAGAATGCCA ACGAAATTGC GGAAGGATTA AATTTTGCCA TTCCTATTGA ATTAGCTAAT 
GATGTTATGC AAAAAATCAT TCGTGATGGT CGAGTTATTC GTGGTTACTT AGGGGTGCAA 
AGTGATATTC TATTTAGCAA TGGAAAGGGT TTAAGAGATA AAGGAATTTT AATTACATCA 
ATATTACAAG GTAGCCCTGC ACATAAAGCT GGTATTCAGC CTGGTGATGT GATTGTTAGT 
TTTGATGGTA TTGATGCTGT TTCTCCTGCT CAAATGATGG AAGCGATTAG TAATACTAAA 
CCTAATACCA CAATAAATAT GGTCATACAG CGTTTAGATA AAACCTTGAC TTTACCTGTT 
GTGATTGAAG AATATAAAGC GAATTAA 

 

Protein sequence

MIKKLIQSII TGLAAAALVL LILPVFKGNG YLTNIFFIQK DILSYKDAVR IASPAVVNVY 
NQAFVFTTNN YQPQINNLGS GVIMSKDGYI LTNEHVVQNA DQIVVALQNG RIFEANLVGS 
DRLTDLAVLK IHADNLATIP QNPKRQAHVG DVVLSIGNPY NLGQSVSQGI ISALGRNAVG 
DFIGRQNFIQ TDAPLNRGNS GGALINSAGE LIGISTLSIG KNANEIAEGL NFAIPIELAN 
DVMQKIIRDG RVIRGYLGVQ SDILFSNGKG LRDKGILITS ILQGSPAHKA GIQPGDVIVS 
FDGIDAVSPA QMMEAISNTK PNTTINMVIQ RLDKTLTLPV VIEEYKAN