| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1021 |
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| Symbol | msbA |
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| ID | 4240519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | - |
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| Start bp | 1126942 |
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| End bp | 1128690 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638104582 |
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| Product | lipid transporter ATP-binding/permease protein |
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| Protein accession | YP_719233 |
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| Protein GI | 113461164 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.2758 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGATA AAGATCTTTC TACATTACAA ACATTTAAAC GGCTATGGCC AACAATAGCA
CCTTTTAAAT TAGGCTTAAT TGCTTCTGCT GTAGCATTGG TATTTAATGC GTTAGCTGAT
GCGGCACTCA TCCAAATGTT AAAACCGGTG TTGGATGAAG GTTTTGGTAA AGTTGACAAT
TCGCTCTTGA GAATAATGGC TATTGTGGTG GTTTTGTTAA TATTTGTTCG TGGGGTCACC
AATTTCATTT CAACTTATTG TCTAGCTTGG GTTTCGGGCA AAGTTGTAAT GGTGATGCGT
CGTAGATTGT TTAGGCATTT AATGTATATG CCCGTTACTT TTTTTGATCA GAATTCGGTA
GGGAGGTTAC TGTCACGTAT TGTTTATGAT AGTGAACAAG TAGCAAATTC TTCATCAGGT
TCGCTAGTTA CAATTGTACG TGAGGGGGCT TACATTATAG CTTTACTCAC GGTAATGTTT
TATACCAGCT GGCAATTGGC TTTGGTGCTT TTTATTATTG GTCCAATTAT CGCGGTTATC
ATTCGTATAG TGTCAAAAAA ATTTCGTGAA TTGGGAAAAA ATTTACAAAA CTCCATGGGA
GATTTAACCT CTTCAGTAGA ACAAATGTTA AAAGGCCATA AAGTTGTTTT AGCTTTTGGC
GGACAAAAAA TTGAAGAAGA GCGTTTTGAT CAAGTAAGTA ATAATATGCG TCGTAGAGGC
ATGAAAGTTA TGGCAGCTAG TGCAATTTCC GATCCGGTTG TACAAATAAT AGCCTCATTT
GCACTTGCTG CCGTTTTATT TTTGGCAACG CTACCGGAAA TCATGACACA AAATCTCAGT
GCGGGTTCAT TTACTGTCGT TTTTTCATCA ATGCTTGCTA TGATGCGACC ACTAAAATCT
TTAACTAACG TAAATGCACA ATTTCAGCGT GGAATGGCGG CTTGTCAGAC TTTATTTGCA
TTATTAGATC TCGAAACTGA AAAGGATACA GGGAAACATG TTGTAGATAC AGTTAAAGGG
GAAGTGCGGT TTGAAAATGT TACTTTCAGT TACAGTGGAA AAGAACATCC GGCATTGAAT
AATATTTCTT TCACTATTCC GCAAGGTAAA ACCGTTGCAT TAGTGGGACG ATCCGGTTCA
GGTAAATCGA CTATAGCCAA CTTGGTTACT CGTTTTTATG ATGTTGAACA AGGTAAAATT
ACTTTAGACG GGGTGAATAT CCAAGATTAT ACTTTGGCAA ATTTACGTGA ACATTGTGCG
GTTGTTTCAC AGCAAGTTCA TTTGTTTAAC GATACTATTG CTAACAATAT TGCTTATGCA
GTTACAGAGA AATGTACTCG TGAGCAAATT ATTGAAGCGG CTGAAGCGGC TTATGCTATG
GAGTTTATCG AAAAATTAGA AAATGGTTTG GATACAGTGA TTGGTGAGAA CGGTGCGAGT
TTATCAGGCG GACAGCGTCA GCGTTTGGCT ATTGCTCGAG CCTTATTACG AGATTCGCCG
GTTTTGATTT TAGATGAAGC AACTTCTGCT TTAGATACAG AGTCGGAACG TGCAATCCAA
GCCGCTTTGG AAACTTTGCA GAAAGATAGA ACGGTATTGG TTATTGCACA CCGCTTATCA
ACTATTGAGA AAGCAGATGA AATATTAGTG ATTGAGCAGG GTGAAATCAA AGAGAGAGGT
TCTCATCAAG AGTTATTAGC CTTAAATGGT GCTTATAAAC AGCTACATAG CACGCAATTT
AATCATTAA
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| Protein sequence | MQDKDLSTLQ TFKRLWPTIA PFKLGLIASA VALVFNALAD AALIQMLKPV LDEGFGKVDN
SLLRIMAIVV VLLIFVRGVT NFISTYCLAW VSGKVVMVMR RRLFRHLMYM PVTFFDQNSV
GRLLSRIVYD SEQVANSSSG SLVTIVREGA YIIALLTVMF YTSWQLALVL FIIGPIIAVI
IRIVSKKFRE LGKNLQNSMG DLTSSVEQML KGHKVVLAFG GQKIEEERFD QVSNNMRRRG
MKVMAASAIS DPVVQIIASF ALAAVLFLAT LPEIMTQNLS AGSFTVVFSS MLAMMRPLKS
LTNVNAQFQR GMAACQTLFA LLDLETEKDT GKHVVDTVKG EVRFENVTFS YSGKEHPALN
NISFTIPQGK TVALVGRSGS GKSTIANLVT RFYDVEQGKI TLDGVNIQDY TLANLREHCA
VVSQQVHLFN DTIANNIAYA VTEKCTREQI IEAAEAAYAM EFIEKLENGL DTVIGENGAS
LSGGQRQRLA IARALLRDSP VLILDEATSA LDTESERAIQ AALETLQKDR TVLVIAHRLS
TIEKADEILV IEQGEIKERG SHQELLALNG AYKQLHSTQF NH
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