| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1004 |
|---|
| Symbol | |
|---|
| ID | 4240497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | + |
|---|
| Start bp | 1105109 |
|---|
| End bp | 1106497 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638104560 |
|---|
| Product | putative transglycosylase |
|---|
| Protein accession | YP_719215 |
|---|
| Protein GI | 113461147 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00893953 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTCC CTTGGCAACA AATAGTGAGA TCAAAACAGA ATTACCATAC TACAATTCAA
GAGCGACAAA AATTGATTGT AGGAACAATC AATAATCCGG TGTCTTATTT TATCGGTACA
AACGGAGAAA CAGGGCTAGA ATATGAATTA AGCAAGGCTT TTGCAAATTA CTTAAATGTT
GATTTGGAAA TGTTTCCTCT AAATAGTGCG GACGCATTAT TTCAGGCTTT AGCACAAGGT
AAAATAGACA TTGCTGCTGC AAGTTTATTT TATCAACAAG ATAGAAGTGA AAAATTCAAA
CTAGGTCCGG CATATCACGC TGCATCTTGG CAATTGACTT ATCGCAAAGG TGAACGTCGT
CCTATCACAT TAGAAAATTT ATCCGGCAAA TTGGTTATTC CGGCTAATTC GGCACTGAAT
AATATTCTGC TGGCAAAAAA AGAAAAATAC CCTTCTTTAA CATGGGAAAC CAGTGAACTA
AGCCAAGAGG AACTCTTATT TCAAGTTGCT GAAGGAAAAA TAGATTACAC AATCGCTACC
TCTACTGAAG TATCAGTTAA TCAGCAAATT AAACCTCAAA TTGCAATTGC CTTTAATGTG
ACTGATGAGT TTACAGTACA TTGGTACTTA TCTGATAAGG GGTCTTCAGA ATTACAAGCC
GCACTATTAG ACTTCATGAA CTCTGCCATT GAAAACGGCT TAATTGCTCG TATTGAAGAA
AAATATTTCA ATCACCTCAA CCAATTTGAC TATGTTGATA CTCGCTCCTA TTTGAATGCA
ATTGAAACAG TTTTGCCTAA ATATGCTCCT TTGTTTGAAA AATATAAAGG TGATTTAGAT
TGGCGTTTAT TGGCAGCCAT ATCTTATCAA GAATCCCATT GGAATCCGGA AGCAACCTCA
CCAACCGGAG TACGCGGTAT GATGATGTTG ACAAAAGCAA CTGCAGATAG AATGAATATT
ACTAATCGTC TCGATCCTGA ACAAAGCATT AAAGCCGGTT CCGAATATTT ACATCTTCTG
CTCAAACAAA TGCCGGATAC TATTTTAAAA GAAGATCGTA TTTGGTTTGC ACTTGCCGCT
TATAACATGG GATTGGGACA TTTATTAGAC GTTAGACGCT TAACTAAACA GCTGGGAGGA
AATCCGGATA ATTGGTTAGA GGTGAAAAAA AATTTACCCT TATTAGCACA AAAACGTTAT
TTTACCCATC TTAAATATGG CTACGCTCGA GGCTACGAAG CGTTTCAATA TGTGGAAAAT
ATTAGAAGAT ATATGAACAG CATAATGAAT TATTATCGGC TTCAACAAAA CCAACAAGAT
CGACAAGATC GGTATGAAAA TGAAAATAAT GATGTCATTT CAACACAAAC ACAACAGGAA
CAACGATGA
|
|---|
| Protein sequence | MVFPWQQIVR SKQNYHTTIQ ERQKLIVGTI NNPVSYFIGT NGETGLEYEL SKAFANYLNV
DLEMFPLNSA DALFQALAQG KIDIAAASLF YQQDRSEKFK LGPAYHAASW QLTYRKGERR
PITLENLSGK LVIPANSALN NILLAKKEKY PSLTWETSEL SQEELLFQVA EGKIDYTIAT
STEVSVNQQI KPQIAIAFNV TDEFTVHWYL SDKGSSELQA ALLDFMNSAI ENGLIARIEE
KYFNHLNQFD YVDTRSYLNA IETVLPKYAP LFEKYKGDLD WRLLAAISYQ ESHWNPEATS
PTGVRGMMML TKATADRMNI TNRLDPEQSI KAGSEYLHLL LKQMPDTILK EDRIWFALAA
YNMGLGHLLD VRRLTKQLGG NPDNWLEVKK NLPLLAQKRY FTHLKYGYAR GYEAFQYVEN
IRRYMNSIMN YYRLQQNQQD RQDRYENENN DVISTQTQQE QR
|
|---|
| |