Gene HS_0908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHS_0908 
SymbolsppA 
ID4240400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaemophilus somnus 129PT 
KingdomBacteria 
Replicon accessionNC_008309 
Strand
Start bp1000290 
End bp1002155 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content36% 
IMG OID638104463 
Productprotease IV family protein 
Protein accessionYP_719118 
Protein GI113461051 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.378235 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTGA TGTTGACCTT TCTCAAATTG TGCTGGCAAA TGCTCAATTT TGCTCGTCGT 
GTTGTAATGA ATATAGTATT TCTTTTTTTC GTTTTATTGA TTGTAGCAGT GTTTTCGGTT
AATTCGAGTA TGTCGAATAA AGTAGATTTA ACTCATTTTA AAGGGGCGTT GCTATTAAAT
TTGGACGGCT ATTTGGCAGA TAATCGTAGC GATGATACGG CATGGCAAGA GCTTCTTTTG
GAATTAGGTA ATCAACATGT ACCGAGAAAA ATCTCAACGT TTGATGTTGT TAATGCCATT
CAAGCGGCTA AAAAAGATCC AAAAATTACC GCACTTGTTC TTGATCTCAA TTATTTTGAT
GGGAAAGATA TTCCTGCGTT AACTTACATT GGGAAAGCTA TTCAAGCCTT TAAAGCCAGC
AAGAAACCAG TGATTGCTTA TGCGGATAAC TATACGCAAA GTCAATATTT ATTGGCAAGT
TATGCGGATG TTATTTTGTT AAATCCGCAA GGTGAAGTGG CGATAGAAGG TATGGTTGCA
GAGAATTTGT ATTTTAAATC GCTATTTAAT AAATTGGAAA TTACACCGCA TATTTTTCGT
GTAGGTACTT ATAAATCTGC GGTAGAACCG TTTATGCTCG ATAAAATGTC AGAGAAAAGT
CGTGAAAATA CAAGCCGTTG GCTTAACCAA TTATGGAAAA GTTATCAGCA AATTGTGGCT
GAAAATCGTG ATATTCCATT AGCACAGGTG TTACCGGATA GTAAAACATA CCTTAGCGAA
TTAAAAGCAC TGAACGGAAA TCAAACTGAA TATGCGAAAA AGCGTGGTTT AATAACAGAA
TTAGCGGTAA CGCAAGAACG AGAAAAAATC ATTAAACGTT GGATAGTTAA TTCTGATGAT
AAGTTGGATT TTGTTGAATT TGAGGATTAT TTGGCAATAT TGAAAAATCG ATTTGCACAA
CCTACACAAC CTGCTATTGC CGTGGTAAAT GTTGAAGGGG CTATTGTCGA TGGTGAAAGT
GATGAACAAA ATGTGGGCGG AGATAGCATA GCACAATTAT TACGTGAGGC GAATGATGAG
CCAAATATAA AAGCGGTTGT ATTGCGAGTA AATAGTCCGG GTGGAAGTGC GTTCGCTTCA
GAAATTATTC GCCAAGAAGT AGATAATTTA CAAAAATCAG GAAAGCCAGT CGTTGTTTCG
ATGGGGGCAA TTGCGGCTTC CGGCGGTTAT TGGATTTCCT CAACGGCAGA TTATATTGTT
GCTGACCCTA ATACAATTAC AGGGTCTATC GGTATTTTTG CCATGTTTCC AACGTTTGAA
AAATCTATGC AAAAAATTGG TGTGAATGCC GATGGTGTTG CGACAACTGA TGTGGTGATG
AAATCACATT TCAGCCCGTT ATCTAAAATC AGCAGTGAGA TTATTCAATT GGAAATAGAG
CATGGTTATG ATCAATTTTT GGATGTTGTT AGCCGTGGGC GTAATTTATC AAAAACACAA
GTTGATAAAA TTGCTCAAGG TCAAGTTTGG TCAGGTTTTG ATGCCTATAC GTATAAACTG
GTAGATCAAC TGGGCAGTTT TGATGATGCA GTCGAAAAAG CTAGAGAATT AGTGATACAA
AAATCTTCAG AAGAAATAAA AGATTTTTCT GTTGTTTGGC TAACGGAAAA AGAACCGTCA
TTATTGGGGG AGTTGATGAA AAATGCTAAA CAACATTCAG AACATAATCT TCGTCAGTAT
ATTGCCCATT TATTCGGCTT TTCTACATCA ATGCAGAAAA TGACTGAGCA ATTAGGTATT
TTAAATAAAT TTAATGATCC CAAAGGGCAA TACTTATATT GTTTGAATTG TGGTGAATTG
AAGTAA
 
Protein sequence
MKVMLTFLKL CWQMLNFARR VVMNIVFLFF VLLIVAVFSV NSSMSNKVDL THFKGALLLN 
LDGYLADNRS DDTAWQELLL ELGNQHVPRK ISTFDVVNAI QAAKKDPKIT ALVLDLNYFD
GKDIPALTYI GKAIQAFKAS KKPVIAYADN YTQSQYLLAS YADVILLNPQ GEVAIEGMVA
ENLYFKSLFN KLEITPHIFR VGTYKSAVEP FMLDKMSEKS RENTSRWLNQ LWKSYQQIVA
ENRDIPLAQV LPDSKTYLSE LKALNGNQTE YAKKRGLITE LAVTQEREKI IKRWIVNSDD
KLDFVEFEDY LAILKNRFAQ PTQPAIAVVN VEGAIVDGES DEQNVGGDSI AQLLREANDE
PNIKAVVLRV NSPGGSAFAS EIIRQEVDNL QKSGKPVVVS MGAIAASGGY WISSTADYIV
ADPNTITGSI GIFAMFPTFE KSMQKIGVNA DGVATTDVVM KSHFSPLSKI SSEIIQLEIE
HGYDQFLDVV SRGRNLSKTQ VDKIAQGQVW SGFDAYTYKL VDQLGSFDDA VEKARELVIQ
KSSEEIKDFS VVWLTEKEPS LLGELMKNAK QHSEHNLRQY IAHLFGFSTS MQKMTEQLGI
LNKFNDPKGQ YLYCLNCGEL K