Gene HS_0905 details

Gene Information

• Locus tag: HS_0905
• Symbol: dxs
• ID: 4240397
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: +
• Start bp: 996452
• End bp: 998305
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 638104460
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_719115
• Protein GI: 113461048
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAT ATCCACTTCT TTCTCTAATT AATTCACCTG ATGATCTGCG ATTATTAAGT 
AAAGACAAAT TACCGCAACT TTGTCAAGAG TTACGTAGTT ATTTATTAGA AAGTGTAAGC 
CAAAGCAGTG GGCATTTAGC CTCGGGTCTT GGCACAGTTG AATTAACTGT AGCTTTACAT 
TATGTATTCA AAACACCTTT CGATCAGTTA CTTTGGGATG TAGGGCATCA AGCCTATCCA 
CATAAAATCC TTACCGGCCG TCGAGATAAA ATGTCAACCA TTCGTCAAAA AGGCGGATTA 
CATCCATTTC CTTGGCGTGA AGAAAGTGAA TTTGATGTGT TAAGTGTTGG ACATTCATCC 
ACATCTATCA GTGCAGGTCT CGGCATTGCG ATTGCCGCAC AGAAAGAAAA TCTCGGACGT 
AAAACAATTT GTGTAATCGG TGATGGTGCA ATTACTGCAG GTATGGCATT TGAAGCATTA 
AATCATGCAG GCTCCGTACA TACAGATATG TTAGTTATTT TAAATGATAA TGAAATGTCA 
ATTTCAGAAA ATGTGGGGGC ATTAAATAAT CATCTGGCTC GCTTATTAAG CGGTTCAATT 
TATTCTACTT TGCGTGAAAG CGGTAAAAAA ATTCTTTCAG GACTTCCGCC GATTAAAGAG 
TTTGTCAAAA AAACCGAAGA ACATGTCAAA GGTTTCGTTT CCCCAGTGGG AACCCTGTTT 
GAACAACTCG GTTTTAATTA TATTGGACCT ATTGATGGGC ATAATATCCA TGAACTCATA 
TCGACTTTAA AAAACATGCA ATCATTGAGC GGTCCGCAAT TCTTACATAT CAAAACGAAA 
AAAGGGAAAG GCTATGCTCC GGCAGAAAAA GATCCTATTG GCTTTCACGG AGTACCTAAA 
TTTGATCATA AATTAGGGGA ATTACCTAAA TCCTCAACGA CACCAACTTA CTCACAGATT 
TTTGGCAGTT GGTTATGTGA AATTGCAGTA CAAGATGAAA AACTGATCGG TATTACGCCA 
GCTATGCGTG AAGGCTCCGG CATGGTTGAG TTTTCGCAAC AATTTCCACA GCAATATTTT 
GATGTGGCAA TCGCAGAACA ACATGCGGTA ACTTTTGCCG CCGGTTTGGC AATTGCAGGT 
TACAAACCTG TTGTAGCCAT TTATTCAACG TTCTTACAAC GAGCCTATGA TCAACTTATT 
CACGATGTTG CCATTCAAAA CCTACCCGTG CTATTTGCTA TTGATCGTGC CGGCATAGTA 
GGTGCAGATG GACAGACTCA TCAAGGTGCA TTCGATTTAA GTTTTATGCG TTGTATTCCT 
AACTTGGTGA TTATGACACC AAGCAATGAA AATGAATGTC GTCAAATGCT CTATACCGGT 
TATAAATGTG GAAAGCCTGC TGCTGTACGT TATCCACGAG GCAATGCAAT CGGTGTTAAG 
TTAGAACCGC TTGCAGAACT ACCATTGGGT AAATCAAAGC TGATTAGACA AGGTAAAAAT 
ATTGCTATTT TAAACTTTGG TACTTTATTG TCAGAAGCAA CAAAAGTCGC TGAAGATCTT 
GATGCAACCG TTGTTGATAT GCGTTTTGTT AAACCTTTGG ATACTCAACG TATTCAAGAA 
ATTGCACAAA CTCATTCTTT GATTGTTACT TTAGAGGAGA ATGCAATTCA GGGTGGAGCC 
GGAAGTGCGG TGGCTGAAAC TTTATATCAG CAGCAACAAA AAGTTTCATT ATTGCAATTG 
GGGCTACCGG ATAACTTTAT CCCTCAAGGT ACACAAAAAG AAATGCTGGC TGAGTTAAAA 
TTAAATGCTG AAGGGATTTT TGAACAAATA AAACAATTTT TGCAAAAAAT TTAA 

 

Protein sequence

MNKYPLLSLI NSPDDLRLLS KDKLPQLCQE LRSYLLESVS QSSGHLASGL GTVELTVALH 
YVFKTPFDQL LWDVGHQAYP HKILTGRRDK MSTIRQKGGL HPFPWREESE FDVLSVGHSS 
TSISAGLGIA IAAQKENLGR KTICVIGDGA ITAGMAFEAL NHAGSVHTDM LVILNDNEMS 
ISENVGALNN HLARLLSGSI YSTLRESGKK ILSGLPPIKE FVKKTEEHVK GFVSPVGTLF 
EQLGFNYIGP IDGHNIHELI STLKNMQSLS GPQFLHIKTK KGKGYAPAEK DPIGFHGVPK 
FDHKLGELPK SSTTPTYSQI FGSWLCEIAV QDEKLIGITP AMREGSGMVE FSQQFPQQYF 
DVAIAEQHAV TFAAGLAIAG YKPVVAIYST FLQRAYDQLI HDVAIQNLPV LFAIDRAGIV 
GADGQTHQGA FDLSFMRCIP NLVIMTPSNE NECRQMLYTG YKCGKPAAVR YPRGNAIGVK 
LEPLAELPLG KSKLIRQGKN IAILNFGTLL SEATKVAEDL DATVVDMRFV KPLDTQRIQE 
IAQTHSLIVT LEENAIQGGA GSAVAETLYQ QQQKVSLLQL GLPDNFIPQG TQKEMLAELK 
LNAEGIFEQI KQFLQKI