| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0586 |
|---|
| Symbol | xylF |
|---|
| ID | 4240070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | - |
|---|
| Start bp | 623548 |
|---|
| End bp | 624549 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638104136 |
|---|
| Product | D-xylose transporter subunit XylF |
|---|
| Protein accession | YP_718798 |
|---|
| Protein GI | 113460731 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTA AATCTAAGTT ATTAGCGGTC GCAACAGCAA CTTTAATGGT TTTTAGCCAT
TCAGTGCTAG CAAACGATCT GAAAATCGGT ATGTCAATTG ATGATTTACG TTTAGAAAGA
TGGCAAAAAG ACCGAGATAT TTTTGTGAAA AAAGCAGAAG CTTTAGGTGC AAAAGTATTC
GTTCAATCTG CAAATGGTGA TGCGACAGCT CAAATTTCTC AAATTGAGAA TATGCTAAAT
AAAGATATTG ATGTGCTAGT GATTATTCCA TTCAATGGCG AAGTATTGTC AAACGTGATC
GCTGAAGCCA AAAAAGAGGG GGTTAAAGTT TTAGCTTATG ACCGTCTGAT CAATAACGCA
GATATTGATT TCTATGTTTC GTTCGATAAT GAAAAAGTAG GTGAACTACA AGCACAAAGC
ATTATTGAGA AAAAACCGAA AGGGAATTAT TTCTTAATGG GCGGTTCACC TGTTGATAAT
AACGCAAAAT TATTTCGTAA AGGTCAAATG AAAGTATTAC AACCGCACAT TGACAGTGGT
GAAATCAACG TGGTAGGCGA TCAATGGGTT GATTCTTGGC TAGCTGAAAA AGCATTACAA
ATTATGGAAA ATGCGTTAAC TGCAAACAAA AACAATATTG ATGCGGTAGT CGCTTCTAAC
GATGCAACTG CCGGTGGTGC AATTCAAGCA TTAAGTGCTC AAGGCTTATC AGGCAAAGTA
GCGATTTCAG GTCAAGATGC TGATTTAGCG GCAATCAAAC GCATTCTTGA CGGTTCACAA
ACAATGACCG TATACAAACC AATCACTAAT TTAGCAGATA AAGCAGCCGA AATTTCAGTC
GCGTTAGGTA AAGGTGGAAA AGTGGAATCC AACTCTCAAT TAAATAACGG ATTGAAAAAT
GTCCCTGCAT TCCTATTAGA GCCTGTCGTC GTTACAAAAG AGAATATTGA TGACACGGTG
ATTAAAGATG GTTTCCATAC CAAAGAGGCT GTTTATAAAT AA
|
|---|
| Protein sequence | MKLKSKLLAV ATATLMVFSH SVLANDLKIG MSIDDLRLER WQKDRDIFVK KAEALGAKVF
VQSANGDATA QISQIENMLN KDIDVLVIIP FNGEVLSNVI AEAKKEGVKV LAYDRLINNA
DIDFYVSFDN EKVGELQAQS IIEKKPKGNY FLMGGSPVDN NAKLFRKGQM KVLQPHIDSG
EINVVGDQWV DSWLAEKALQ IMENALTANK NNIDAVVASN DATAGGAIQA LSAQGLSGKV
AISGQDADLA AIKRILDGSQ TMTVYKPITN LADKAAEISV ALGKGGKVES NSQLNNGLKN
VPAFLLEPVV VTKENIDDTV IKDGFHTKEA VYK
|
|---|
| |