| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0578 |
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| Symbol | dapE |
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| ID | 4240062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | + |
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| Start bp | 613409 |
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| End bp | 614542 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638104128 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_718790 |
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| Protein GI | 113460723 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA ACATAATTAC TCTCACTCAA AGTCTTATTC AACGTCCTTC AATTAGCCCT
GATGATCAAG GCTGTCAACA ACTTATTGCC GAACGTTTAC AAGCGGTTGG TTTTAAGTTG
GAGTGGTTAC CTTTTGGTGA TACCTTAAAT TTATGGGCCA CTCATGGTGA AGGAAAATGT
ATTGCTTTTG CGGGGCATAC AGACGTTGTT CCGATTGGTA ATGAAAGTCA ATGGACTTAT
CTGCCTTTTG AAGCCCGAAT TGTTGAAAAT ATGCTGTATG GGCGTGGTGC TGCGGATATG
AAAGGTGCTT TGGCAGCAAT GGTTATTGCG GCGGAAACTT TTGTGAAACA CCTGCCAAAT
CATCAGGGAA AAATAGCCTT GTTGATTACC TCTGATGAAG AGGCAGCGGC TACCAATGGA
ACGGTAAAAG TAGTGGAAAC GCTAATAAAA CGTAATGAAA AGATTGACTA TTGTGTAGTA
GGTGAACCTT CCAGTGCAAC GCAATTTGGC GACATTATTA AAAACGGACG ACGTGGTTCT
ATTACAGGAA ATTTGTATAT TCAAGGTGTA CAAGGTCATG TGGCTTATCC TCATTTAGCG
GATAATCCTG TTCATAATGC CTTGAAATTC TTAGATGAAT TAACTCATTA TCAATGGGAT
AAAGGTAATG AATTTTTCCC GCCGACCAGT TTACAAATCG CCAATATTCA TGCAGGGACA
GGTAGTAATA ATGTAATCCC CGGTGAACTT TATGTGCAAT TTAACTTGCG TTATTGTACT
GAGGTGACAG ATGAAATTAT TAAAACTAAA GTGACTGAGA TGTTGGAAAA GCATAAATTA
ACGTACCGTA TAGACTGGAA TTTATCGGGC AAACCGTTTT TAACACCTCA AGGAAAATTA
GTAAATGCCA CACTGGAAGC AGTAGAAAAA TTTACTCAAA TCAGACCGCA CTTAGATACA
GGCGGTGGGA CTTCTGATGC CCGTTTTATT GCCACAATGG GAGCGGAAGT CGTGGAGTTT
GGACCTCTTA ACCAAACCAT TCATAAAGTG AATGAATGCG TGAATATTGA TGATTTAGCT
AAGTGCGGTG AGATTTATTA TCATATTTTG GAAAAATTGT TTAATGAACA ATAG
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| Protein sequence | MKNNIITLTQ SLIQRPSISP DDQGCQQLIA ERLQAVGFKL EWLPFGDTLN LWATHGEGKC
IAFAGHTDVV PIGNESQWTY LPFEARIVEN MLYGRGAADM KGALAAMVIA AETFVKHLPN
HQGKIALLIT SDEEAAATNG TVKVVETLIK RNEKIDYCVV GEPSSATQFG DIIKNGRRGS
ITGNLYIQGV QGHVAYPHLA DNPVHNALKF LDELTHYQWD KGNEFFPPTS LQIANIHAGT
GSNNVIPGEL YVQFNLRYCT EVTDEIIKTK VTEMLEKHKL TYRIDWNLSG KPFLTPQGKL
VNATLEAVEK FTQIRPHLDT GGGTSDARFI ATMGAEVVEF GPLNQTIHKV NECVNIDDLA
KCGEIYYHIL EKLFNEQ
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