Gene HS_0404 details

Gene Information

• Locus tag: HS_0404
• Symbol: ispG
• ID: 4239880
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: +
• Start bp: 429307
• End bp: 430413
• Gene Length: 1107 bp
• Protein Length: 368 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638103947
• Product: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
• Protein accession: YP_718614
• Protein GI: 113460550
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
• TIGRFAM ID: [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATCGT TTAAACCAAC TATTAATCGT CGTCAATCGA CAAAAATTTA TGTGGGAAAT 
GTACCGATAG GTGGTGATGC ACCTATTGCC GTACAATCTA TGACCAATAC AAGAACGACT 
GACATAGAAG CAACAGTGGC ACAAATTAAA GCATTGGAGC GTGTCGGTGC TGATATTGTG 
CGTATTTCTG TGCCTACTAT GGATGCGGCA GAGGCGTTCA AATCAATTAA ACAGCAGGTT 
AATATTCCGT TAGTTGCAGA CATCCACTTT GATTATCGTA TTGCTCTTAA GGTGGCGGAA 
TATGGGGTAG ATTGTTTGCG AATTAATCCC GGTAATATTG GGCGTGAAGA TCGTATTCGT 
GCCGTTGTTG ATTGTGCGAA GGACAAAAAT ATCCCTATTC GTATAGGTGT TAATGCAGGA 
TCTTTAGAAA AAGATCTACA GGAAAAATAT GGCGAACCTA CACCAGAGGC TTTGCTGGAA 
AGTGCGTTAC GTCATGTGGA AATTTTAGAT CGTTTGAACT TCGATCAGTT TAAGGTTAGT 
GTGAAAGCCT CGGATGTCTT TCTTGCGGTA GAAAGCTATC GCTTATTGGC AAAAGCAATT 
AAACAACCAC TGCATTTAGG AATTACCGAA GCCGGTGGAG CACGTGCCGG TGCGGTAAAA 
AGTGCGGTCG GTTTGGGGAT GCTTTTAGCG GAAGGCATTG GCGATACATT ACGCGTTTCT 
TTAGCAGCCG ATCCTGTCGA AGAAATCAAA GTAGGTTTTG ATATTTTAAA ATCTCTGCGT 
ATTCGTTCTC ATGGCATTAA TTTTATTGCC TGTCCGACTT GTTCTCGTCA GGAATTTGAT 
GTAATCGGTA CTGTCAATGC ACTGGAGCAA CGTTTGGAAG ATATTGTTAC ACCAATGGAT 
GTATCCATTA TCGGTTGTGT GGTGAACGGA CCAGGCGAAG CGTTAATTTC AGATCTTGGA 
GTAACAGGCG GTAATAAAAA GAGCGGTTAT TATTTAGATG GAAAACGTCA AAAAGAACGC 
TTTGATAATG AGGATTTAAT TAATCAGTTA GAGGCAAAAA TTCGTGCGAA AGTCGCACAG 
CAAGATCCAA AAAACAGAAT TATCTAA 

 

Protein sequence

MSSFKPTINR RQSTKIYVGN VPIGGDAPIA VQSMTNTRTT DIEATVAQIK ALERVGADIV 
RISVPTMDAA EAFKSIKQQV NIPLVADIHF DYRIALKVAE YGVDCLRINP GNIGREDRIR 
AVVDCAKDKN IPIRIGVNAG SLEKDLQEKY GEPTPEALLE SALRHVEILD RLNFDQFKVS 
VKASDVFLAV ESYRLLAKAI KQPLHLGITE AGGARAGAVK SAVGLGMLLA EGIGDTLRVS 
LAADPVEEIK VGFDILKSLR IRSHGINFIA CPTCSRQEFD VIGTVNALEQ RLEDIVTPMD 
VSIIGCVVNG PGEALISDLG VTGGNKKSGY YLDGKRQKER FDNEDLINQL EAKIRAKVAQ 
QDPKNRII