Gene HS_0398 details

Gene Information

• Locus tag: HS_0398
• Symbol: ccmF
• ID: 4239874
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: +
• Start bp: 422535
• End bp: 424484
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 638103941
• Product: cytochrome c-type biogenesis protein F
• Protein accession: YP_718608
• Protein GI: 113460544
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGCTG AATTAGGCAA TTATGCTCTG GCTTTAAGTT TAGCTATTTC TGTTTTATTA 
TCTATTTTTC CATTATGGGG AGCGGAAAAA GGCAATGTAC AGATGATGGC TTTAGCTCGC 
CCAATGACCT ATGGTTTATT TGTTAGCTTA ACTGTTTCTT TTGTTGCACT TTTCTATTTA 
TTTCTGACAA ATGATTTTTC AGTACAATAT GTGGTGAACA ATTCAAATAC CAACTTACCT 
TTGCAATATC GTCTATCCGC TGTTTGGGGC TCCCACGAAG GTTCTTTATT ACTTTGGATT 
TGGCTATTGA CTCTTTGGAG TGCGGCTGTG GCTTTTTTGA GTAAACAATT ACCCCAAGAA 
GCTGTGGCTC GTGTCTTGGC AATTATGGGT ATTATTACGA TTGGTTTCTT ACTATTTGTG 
ATGTTTACTT CTAACCCTTT TGACCGCACT TTCCCTGATT TTCCTGTTGA GGGAAGAGAA 
TTAAATCCAT TATTACAAGA TATTGGTCTG ATTTTTCATC CGCCTTTACT TTACATGGGC 
TATGTGGGTT TTTCCGTTGC TTTTGCTTTT GCTATTGCAT CATTGATGAC GGGAAAACTG 
GATACCGCAT GGGCAAGATG GTCCCGACCT TGGACAATGG CTGCTTGGGT ATTTCTAACA 
TTGGGGATTG TGCTGGGATC GTGGTGGGCA TATTACGAAC TTGGCTGGGG CGGTTGGTGG 
TTCTGGGATC CTGTAGAAAA CGCCTCTTTA ATGCCTTGGC TTGCCGGTAC TGCATTGCTT 
CATTCTCTTG CGGTAACGGA AAAACGTGGT TCATTTAAAG CATGGACAGT ATTGCTGGCA 
ATTTTGGCTT TTTCACTGTG TTTATTAGGT ACTTTTTTGG TTCGTTCCGG TATTTTGGTT 
TCGGTGCATG CTTTTGCCTC TGACCCAACT AGAGGTTTAT ATATTTTAGC TTATTTAATT 
GTAGTTATTG GCGGTTCGCT AGCGTTATAC GCTTATAAAG GCAATCTTAT TCGCACAAGA 
AACAATGCTG AACGTTATTC TCGAGAAACT ATGTTGTTAA TCAATAATAT TTTATTAATG 
ACCGCACTTA GTGTGGTGTT CTTGGGTACT CTCCTGCCTT TAGTACACAA ACAATTAGGG 
TTGGGAACTA TTTCTATCGG CTCTCCATTT TTTGATCAAA TGTTTTTATT GATCATGATC 
CCTTTATCAC TTTTATTGGG TGTCGGACCT TTAGTAAAGT GGCGTCGAGA CCAATTCTGT 
GCTATTCGTC TTCCGGTTAT CATCAGTTCA ATTATTATGC TTATTACCGG ATTTGTTTTA 
CCTTATTTTT TACAAGATCG TATTGCAGTG AGTGCCGTTC TTGGTGTCAT GATGGCAATG 
TTTATTCTTC TTCTAGCACT CTATGAATTG CAGCAAAGAG CAACGCATAA GCATAGCTTT 
TGGATTGGCA TAACAAAATT GTCTCGTTCT CATTGGGGAA TGGTTTTAGC TCATTTAGGG 
GTTGCGATGA CGATATGGGG AATTGCTTTT AGCCAAAATT ACAGTATTGA AAGAGACGTT 
CGAATGAATG TGGGGGATAC AGTAAAAATT GCAGATTATG AATTTACTTT CCAAGGCATA 
TCCGATGCCA ATGGTGTCAA TTACTTAGGC GGAAAGGCAC AAATTGACAT CAGTCGAAAC 
GGTAAGTTTG AAACCACGTT GTTTGCTGAA AAACGTTTCT ATACAGTGAG TAAAATGACA 
ATGACTGAAG CGGCTATTGA TTGGGGGTTA TCTCGAGATC TATATGTTGC ACTGGGCGAA 
AGTTTAAATG ATGGTTCATG GGCTTTACGC TTGTATTATA AACCTTTTAT TCGTTGGATT 
TGGCTGGGAG GTATATTTAT GGCATTCGGC GGATTACTCT GTATATTTGA CCGACGTTAT 
CGTTTTGGAA AACTTCTAAA ACAAGGATAA 

 

Protein sequence

MIAELGNYAL ALSLAISVLL SIFPLWGAEK GNVQMMALAR PMTYGLFVSL TVSFVALFYL 
FLTNDFSVQY VVNNSNTNLP LQYRLSAVWG SHEGSLLLWI WLLTLWSAAV AFLSKQLPQE 
AVARVLAIMG IITIGFLLFV MFTSNPFDRT FPDFPVEGRE LNPLLQDIGL IFHPPLLYMG 
YVGFSVAFAF AIASLMTGKL DTAWARWSRP WTMAAWVFLT LGIVLGSWWA YYELGWGGWW 
FWDPVENASL MPWLAGTALL HSLAVTEKRG SFKAWTVLLA ILAFSLCLLG TFLVRSGILV 
SVHAFASDPT RGLYILAYLI VVIGGSLALY AYKGNLIRTR NNAERYSRET MLLINNILLM 
TALSVVFLGT LLPLVHKQLG LGTISIGSPF FDQMFLLIMI PLSLLLGVGP LVKWRRDQFC 
AIRLPVIISS IIMLITGFVL PYFLQDRIAV SAVLGVMMAM FILLLALYEL QQRATHKHSF 
WIGITKLSRS HWGMVLAHLG VAMTIWGIAF SQNYSIERDV RMNVGDTVKI ADYEFTFQGI 
SDANGVNYLG GKAQIDISRN GKFETTLFAE KRFYTVSKMT MTEAAIDWGL SRDLYVALGE 
SLNDGSWALR LYYKPFIRWI WLGGIFMAFG GLLCIFDRRY RFGKLLKQG