Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HS_0380 |
Symbol | |
ID | 4239856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haemophilus somnus 129PT |
Kingdom | Bacteria |
Replicon accession | NC_008309 |
Strand | + |
Start bp | 390391 |
End bp | 391419 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638103923 |
Product | periplasmic-binding protein |
Protein accession | YP_718590 |
Protein GI | 113460526 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000526249 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAAAA TGAAAGTCGT ATTGACCAGT GCAACAGTTC TACTTGCTAC ATTGCTTGCC GCTTGTGGTG ATAATAACAA AGCGTCGAAA GATGTTACTG CGAGCAACGT TGCGGCAAAC AGCAGCAGTG CTGAAAGTGC GGTACCAGCC ACAGTGCAAA GCAAATTTGT GACCATTGCT ACTGGCGGTG CTTCCGGTCC TTACAATATT ATTGCGACGA CACTGACAGG TATTTATAGT AAAAATCTAA AAACTAATTC CAAAACACAA ACTACTGGTG CATCGGTAGA AAATTTAAAC TTGATGGCAC AGAAAAAAGT GGAAATGGCG TTTGTGATGA GTGATGCGTT AAATGATGCG TTAAATGGTA CAGGCAGTTT CAAAAATAAA ATTGAGAATG TGGAACAAAT AGCAGCACTT TATCCTAACT ATGTACAAAT TGTCACCTCT AAACGTTCCG GCATTAAAAC CATTACCGAT TTAAAAGGGA AACGGGTAGC GACCGGCGAT CAAAATTCCG GAGTCGAAGT CAATGCACGT AACTTACTTG CCGGTTTTGG CATTTCCTAT GCGGATATTA AGGTTGATTA TCTCGGTTAT GCTGCAGCGG CAGATGCTCT AAAAGCGGGA ACCATTGATG CGGCGTTCTT AACCAGTGGC TTGCCAAATT CTGCCTTAAT GGAATTGCAA CAAAGTTTTG ATCTGCAATT GGTCTCTATC CCGGCTGACG GAATTAAAAA ATTAGCCGCA GATAAACCGT ATTTTAATGC GATGGATATT CCAGCGAACA CCTATGGCAA TCCTGAACCG ATTCCGACAG CGGCAATTAA AAATGCCTTG GTGATCCGTA AAGAGCTCAG CGAAGCAGAT GGGTATTTAT TAACCAAAAC CTTCTTTGAA AGTTTGCCAC AATTGCAAAC CGCACACCAA GCGGCGAAAG GCATTAATGT GAAAGAAGCA CAGGAAGGTG CAGTTGCACC ATTACATCCG GGTGCAAAAA AATATTATGA CGAAGTTAAT GCGAAATAA
|
Protein sequence | MKKMKVVLTS ATVLLATLLA ACGDNNKASK DVTASNVAAN SSSAESAVPA TVQSKFVTIA TGGASGPYNI IATTLTGIYS KNLKTNSKTQ TTGASVENLN LMAQKKVEMA FVMSDALNDA LNGTGSFKNK IENVEQIAAL YPNYVQIVTS KRSGIKTITD LKGKRVATGD QNSGVEVNAR NLLAGFGISY ADIKVDYLGY AAAADALKAG TIDAAFLTSG LPNSALMELQ QSFDLQLVSI PADGIKKLAA DKPYFNAMDI PANTYGNPEP IPTAAIKNAL VIRKELSEAD GYLLTKTFFE SLPQLQTAHQ AAKGINVKEA QEGAVAPLHP GAKKYYDEVN AK
|
| |