Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HS_0377 |
Symbol | ligA |
ID | 4239853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haemophilus somnus 129PT |
Kingdom | Bacteria |
Replicon accession | NC_008309 |
Strand | - |
Start bp | 385592 |
End bp | 387613 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638103920 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_718587 |
Protein GI | 113460523 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAGCAAG GAATTTTTAT GATCAAGCAA CAAATTGAAG AATTACGACA ACTATTACGC CATCATGAAT ATCAGTATCA TGTGTTAGAC AATCCGCAAA TTCCGGACAG TGAATACGAT CGCTTATTTC ATCAATTAAA AGCGTTGGAA CAACAATATC CTGAATATGC CAGTGAAAAT TCGCCAACAC AGAGAGTAGG GGCGAAACCG TTAAGTAATT TTGCTCAAGT TAAACATGAT ATTCCAATGT TATCCTTAGA TAATGCTTTT TCTGATGAAG ATTTCTTTGC TTTTGTCAAA CGTATTCAAG ATCGTTTGAT ACATGTTCAT CATTCTTTAA CATTTTGTTG CGAACCGAAA TTAGACGGTT TGGCAGTCAG TATTTTGTAT ATAAATGGTC AGCTGGTACA GGCTGCAACT CGGGGCGATG GGACGACCGG TGAAGATATT ACGGCAAATA TTCGTACTAT TCGTAATATT CCATTGCAAT TATTAACAGA TAATCCACCG GCTCGTTTGG AGGTGCGTGG GGAAGTTTTT ATGTCGCAAG CAGGTTTTGA AAAACTGAAC AAAACAGCTT TAGCGAAAGG AGAAAAAACA TTTGCTAATC CACGTAATGC GGCTGCAGGT TCTTTGCGTC AACTTGATCC CAAAATTACC GGTCAACGTC CTTTGATGTT AAACGCTTAT GGTATTGGTA TTGCAGAAGG AGTGGAATTA CCGGATACAC ATTTTGCTCG TTTACAATGG CTAAAATCTA TTGGCATACC GGTAAATAAT GAAATTCAAT TATGTCATGG GATTGAAAAA GTGTTGGATT TCTACCGCAC TATTAAGCAA AAACGCAGTT CCTTAGGTTA TGACATTGAT GGCACGGTAT TAAAAATTAA TGATATTGAC TTGCAACAAC AACTTGGTTT TATTTCTAAA GCACCTCGCT GGGCAATTGC TTATAAATTT CCGGCACAAG AAGAGCTGAC AATTTTGAAT AATGTGGAGT TTCAGGTTGG GCGAACCGGT GCCATTACAC CGGTAGCAAA ATTAGAACCT GTTTTTGTCG CAGGAGTCAC TGTGAGTAAT GCGACTTTAC ATAATGGTGA TGAAATAGCA CGTTTGGATA TTGCGATTGG TGATACCGTG ATTGTGCGTC GTGCCGGAGA TGTGATTCCG CAAATTATCG GCGTGTTACA TGAACGTCGT CCGGAAAATG CAAAATCTAT TATTTTTCCA AGCAATTGTC CTGTGTGTGA TTCCGTTATT AGCAAAATTG AGGGAGAGGC AGTTGCTCGT TGTACGGGAG GCTTAATTTG TGCAGCTCAA CGCAAAGAGG CACTTAAACA TTTTGTTTCA CGCAAAGCGA TGGATATTGA CGGCATTGGT GCAAAATTAA TTGAACAGTT GGTTGAAAGG GAGTTAGTAC ATACACCGGC TGACTTATTT AAATTAGATC AGGTTACTTT AATGCGTTTA GAGCGTATGG GAGCGAAATC GGCAGAAAAT GCCTTAGCAA GTTTAGCTAA AGCGAAAAAA ACCACATTGG CTCGTTTTAT TTTTGCACTT GGCATCCGTG AAGTTGGGGA AACTACTGCA TTAAATTTAG CAACTCATTT TAAGACACTA GAGGCTTTTG AAAATGCAAC GTTTGAGCAA TTGCAAAAGG TACAAGATGT TGGTGAAGTA GTAGCTAAAC GTATTCGTTC ATTCTGGTCT GAGCCTCATA ATGTTGCTGT GGTAAAAGAT TTAATTGCAC AAGGCATTCA TTGGGACGAC GTTGAAGTTA AAGAGGTGCG GGACAATCCT TTGAAAGGAA AAACCGTCGT ATTAACCGGT ACGTTAACGA AAATGGGGCG TTCAGAGGCA AAAGAATATT TGTTGCAATT AGGCTGTAAA GTTAGCGGCA GTGTTTCGAG TAAAACGGAT TTTGTTATTG CAGGGGAAAG TGCGGGGTCA AAATTAACTA AAGCCACTGA GCTTGGTATT AACATTCTGA GTGAAAATGA GTTTTTGGCT TTGTTAGCAT AA
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Protein sequence | MKQGIFMIKQ QIEELRQLLR HHEYQYHVLD NPQIPDSEYD RLFHQLKALE QQYPEYASEN SPTQRVGAKP LSNFAQVKHD IPMLSLDNAF SDEDFFAFVK RIQDRLIHVH HSLTFCCEPK LDGLAVSILY INGQLVQAAT RGDGTTGEDI TANIRTIRNI PLQLLTDNPP ARLEVRGEVF MSQAGFEKLN KTALAKGEKT FANPRNAAAG SLRQLDPKIT GQRPLMLNAY GIGIAEGVEL PDTHFARLQW LKSIGIPVNN EIQLCHGIEK VLDFYRTIKQ KRSSLGYDID GTVLKINDID LQQQLGFISK APRWAIAYKF PAQEELTILN NVEFQVGRTG AITPVAKLEP VFVAGVTVSN ATLHNGDEIA RLDIAIGDTV IVRRAGDVIP QIIGVLHERR PENAKSIIFP SNCPVCDSVI SKIEGEAVAR CTGGLICAAQ RKEALKHFVS RKAMDIDGIG AKLIEQLVER ELVHTPADLF KLDQVTLMRL ERMGAKSAEN ALASLAKAKK TTLARFIFAL GIREVGETTA LNLATHFKTL EAFENATFEQ LQKVQDVGEV VAKRIRSFWS EPHNVAVVKD LIAQGIHWDD VEVKEVRDNP LKGKTVVLTG TLTKMGRSEA KEYLLQLGCK VSGSVSSKTD FVIAGESAGS KLTKATELGI NILSENEFLA LLA
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