| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0094 |
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| Symbol | rumA |
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| ID | 4239603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haemophilus somnus 129PT |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008309 |
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| Strand | + |
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| Start bp | 86590 |
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| End bp | 87909 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638103626 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_718301 |
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| Protein GI | 113460243 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.146255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTTTTAC TTTATCAGCC AAAGAAACAA AAAAAATTGA GAGCAGCTTT TACGACCATT
GTTCAAGATT TGGATTATCA AGGATTAGGT GTAGCAAAAA TTCAAGGAAA AACGTGGTTT
ATTGAGAACG CATTACCACA AGAGCAAGTA CAGGTTCAAG TTATTGAAGA AAAACGTCAA
TATGGACTGG GTCGAGTTCA AAAGATTTTA CAAGCCAGCC CTTTGCGACA AACTCCAAGA
TGTGCTTATT ATCAAATTTG TGGCGGCTGT CAATCTCAGC ATATCCCTAT ACATTTACAA
CGTGAAACGA AACAAAAAGC GTTATTTCAG CGTTTAACCA AACTGCAAAA AGAGGCTATA
GAATTTATGC CGATGATAAG TGGCGAAGCA TGGCATTATC GCCGTAGAGT ACGCTTAAGT
TTGTACTGGG ACGCTAAAAG TAAAAATTTG AAGATAGGCT TTCGGCAAAA AAATTCACAA
CAAATCGTGA ATATTCGTCA ATGCGATGTG CTTGATCCCT TGTTAAATGA GTTATTACCT
AAATTGCATG AGTTGTTGAG TACGTGGTCT AAACCGAAAA CACTAGGACA TATTGAATTA
GTTGCCGCAG ATAATGGCGT AGCGATGTTA TTGAGAGTAA CAGAAAAATT GGCTGAACAT
GACCGCACTT TATTGTTGGA TTTTGCATTT AATCATCAAG TGATGTTATT TGTACAAGAT
GAAAAAGAGA TTTGTCATTT GCAAGGAGAT TTGCCTTATT ACCAATTAGA TGATGGTTCT
ATTTTACATT TTGATATTCG TGATTTTATT CAGGTTAATC GCCAACTTAA CCAAAACATG
GTCAATACTG CACTGGATTG GTTGGATTTG AAGAAGAAGG ATAATGTGTT GGATTTATTT
TGTGGTATGG GAAATTTTAC CTTGCCGATT AGCCGATATG TGAAAAGTGC GGTAGGAATT
GAGGGTGTTT TACCTATGGT CGAAAAAGCC CGTCGTAATG GGGAACGAAA TCATTGTCAT
AATGTCCAAT TCTACCAGTG CGATTTAAGT CAATCTTTTA CTGAGCAAGA ATGGGCAAAG
GTTCCTTTTG ACAAAATCTT ACTGGATCCG CCGAGAAGCG GTGCCGCATT TGCTTTAAAT
GCATTGTGTT ATTTAATGGC TGAAAAAATA GTGTATGTGT CTTGTAATCC GGCGACATTA
GTGCGTGATG TGGAGCTTTT GCTTAAGTTT GGTTATCAAT TAAAAAAAGT CGCAATGATT
GATATGTTCC CACATACAAG TCATCTGGAA AGTATTAGCT TATTTGAAAG GAACAGATAG
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| Protein sequence | MVLLYQPKKQ KKLRAAFTTI VQDLDYQGLG VAKIQGKTWF IENALPQEQV QVQVIEEKRQ
YGLGRVQKIL QASPLRQTPR CAYYQICGGC QSQHIPIHLQ RETKQKALFQ RLTKLQKEAI
EFMPMISGEA WHYRRRVRLS LYWDAKSKNL KIGFRQKNSQ QIVNIRQCDV LDPLLNELLP
KLHELLSTWS KPKTLGHIEL VAADNGVAML LRVTEKLAEH DRTLLLDFAF NHQVMLFVQD
EKEICHLQGD LPYYQLDDGS ILHFDIRDFI QVNRQLNQNM VNTALDWLDL KKKDNVLDLF
CGMGNFTLPI SRYVKSAVGI EGVLPMVEKA RRNGERNHCH NVQFYQCDLS QSFTEQEWAK
VPFDKILLDP PRSGAAFALN ALCYLMAEKI VYVSCNPATL VRDVELLLKF GYQLKKVAMI
DMFPHTSHLE SISLFERNR
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