Gene CPR_B0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_B0001 
Symbolbcn 
ID4206646 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008264 
Strand
Start bp551 
End bp3190 
Gene Length2640 bp 
Protein Length879 aa 
Translation table11 
GC content32% 
IMG OID642567233 
Productbacteriocin 
Protein accessionYP_699920 
Protein GI110804016 
COG category[T] Signal transduction mechanisms 
COG ID[COG3103] SH3 domain protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones161 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAACA ATATAATTCC AAATGTTAGT TCAGGGGATT TAGTAGGAAG TACACCTACG 
TTTCCGCCAA ATGCAGTAGT AAGAGGAGAT TTTTTATATC TAAGAGATGT TGATGGTAAT
CAAATTCCAG GAAGAACAGT AAGTGATGGA GATGAAATTA CAGTTTTATT TATAAGTAAT
GAAAAAAATA TAGTATTAGT TCAATATCCA ACAAGTTCTG GATATAGACA AGGATATGTA
ACAAATGCAA GAAGCATAAT AAAATACAAA GACGATTATT CATGGGTAAA TGGTTCAACA
CCTGAGCCAG TATATGACTT TGATAAAACA ACACAAATAG GAACATTAGA TCCAAGAGAA
AGAGCCGTAG TTCTTTATAA AGTAGATGGA ATGACATATG TTGCTTATGA TACAGGAAAA
GGTAAGCTTA CAAAGTCAGG ATTAGTTCAT TATGAAGGAG CTGGTAGTTC TACTGGAGGC
GGAAGTTTTA ATGGAGTAGC ACCAGGAGAG GTTGTACCAG GTGGATTCAC ATATGAAAAC
AATGCAGAGG TAGTTGGTGA TGAACTATAT CTAAGAGATG CAAATGGTAA TAGAATACCA
GGTAGAAGTG TAAGTGTAGG AGATAAAATA ACTGTTTTAG ATGTTAGTTA TAGCAAGCAA
TTAGCTTTAG TACAGTATCC AGCTGGCAAT GTAGTAAGAC AGGGTTATGT AACAAATGCA
ACTAACTTAA TAAGGTACTT TAATCAAAGT ATGTGGCACA ATGGAAGTAC ACCAGAGGAA
GTATTAGATG AAAATGGTGG ACATTTAGGA TCATTAGATC CATATGAATC AGCAACACCA
CTATATAAGA AAAATGGAAT GACACATGTT GTTTATAATA CATCCAAAGG ACCTAACACA
AAGTCAGGTT ATGTAAAATA TGAAGGTTCA GCAGCTACTA GAGTGGATAT ACCTAGACCA
TCAATAACAA ATTCACAAAA AATAGTATAT GGAACAAGTG GAAGAGGAAG AGAATTAGCA
GCTTATAAAG TTGGTAATGG AGCTAATTCA TTGATATATG TATGTGCAAT ACACGGATGG
GAAGATCACT GGGCAGCAGA TGGTATTGAG TTAACTAGAA TAGGTAATGG ACTTATAGAG
CACTTCCAAA ATGCAGGAAC AAACAATTGG TCACTATATA TAATTCCAGT AGCAAATCCA
GATGGATTAT CAGAAGGATA TACAAATAAT GGGCCAGGAA GATGTACTAT AGTAGGTGCA
GTAGATTGCA ATAGAGATTT CCCAATAGGA TTTACACCAT ATGGAGATTC AAGACATTGG
ACAAATAAAG AGCCGTTAAG TGTACCAGAA TCAAGAAGTT TACGTGACTT TATAAGTGAA
ATAAAAGGAA AGACATCAGG TTCAACATAT TTAATAGATA TGCACGGATG GGAAGATAAG
ACAATAGGAG ATTCACATAT ATCAAGAGCA TTCCAAAATC AATTTGGATT TGTAAATGGA
TGTTATGATG GAGTATATCA AGGAGGATTT TTAATATCAT GGGCAAATTC AATAGGAGTA
AGAGCAGCCT TAATAGAATT ACCACAATCA TGTTATAGTC ATTCAGATGC TGTTAATGGA
AGATATCTTC AAAAGTGTAT AAATGCAGTA ACAAATCTAA TAGGGGGTTC TGGCGGTAGT
TCATCAGGAG GAAGTTCATC TTCAGATATA ACTTATATAT CAAACGGAGA AGTAATAAAT
GTACAATCCT TCCTAAATGT AAGAAAAGGA CCAGGAACAG ATTATGACTC AATAGGACAG
TTGCATCAAG GAGATAAGGT AAGCATAGTA GCTAAAAATG GAACATGGTA TAAAATAAAA
TATGGTTCAG GCTATGGTTA TGTACATTCT GATTTCGTTA AAAATGATAC AGTGTTGCCT
ATCACGCCAG AAGAGAATGA TAAGGATAAA GAACAAGCTA AGAATAAAGC TATAGAATAT
GTTAAAAATA TAATTGGAAC TGAAATTAAG TTACCATTTA ACACATATAA AACAATAATA
GATGGAATTG TGGAAATTGA TTTTAAATAT GGATTAAATA GTTATATATT TCCTGATGCT
GCAATAAATC TTAATATTGA AGAGGGAAAG TTAAAAGCTA ATAATAATGC AGGAAATTTA
ATGTTGATGT TCCTTGACAT TTATAAAAAG AAAAATCCAT TAGTTAGATT TTTACTAAAT
AAACTTATAT ATAAAATTGA AGAAGGAGAA ATTTCAATAG AAATTAATCC GGCTGAGCTA
TCTATAGAAA TATCTATAGC ATCAAAGTTA TATGAAAACA AAAAGTTTGA GATGGGAAAT
AAGGTTTTCT TTAGCTTATT GTTTAAAATT AATAATGATG AGATAGAAAA GATTAAAAAA
GAACTTGGAG AAGTCGCAAA AGAAGTATTG GACGAATTAG TAAGTTTAAT AAATTATTTA
ATGGAAAATG CAGATAATGT ATTTTTAGGT GTTCTTATGG TTGTATTGGT AATTTTAGCA
GCATTTTATT TAGTACCAGC ATTAGCAGCT TCTTTAGGAG TAACAGCAGG AGTAACAGCT
TTATCAGAGG CAATTGCAGC GATACTTGTA GCAGTTAAAG CAATGCCAAC ATTAAAATAG
 
Protein sequence
MANNIIPNVS SGDLVGSTPT FPPNAVVRGD FLYLRDVDGN QIPGRTVSDG DEITVLFISN 
EKNIVLVQYP TSSGYRQGYV TNARSIIKYK DDYSWVNGST PEPVYDFDKT TQIGTLDPRE
RAVVLYKVDG MTYVAYDTGK GKLTKSGLVH YEGAGSSTGG GSFNGVAPGE VVPGGFTYEN
NAEVVGDELY LRDANGNRIP GRSVSVGDKI TVLDVSYSKQ LALVQYPAGN VVRQGYVTNA
TNLIRYFNQS MWHNGSTPEE VLDENGGHLG SLDPYESATP LYKKNGMTHV VYNTSKGPNT
KSGYVKYEGS AATRVDIPRP SITNSQKIVY GTSGRGRELA AYKVGNGANS LIYVCAIHGW
EDHWAADGIE LTRIGNGLIE HFQNAGTNNW SLYIIPVANP DGLSEGYTNN GPGRCTIVGA
VDCNRDFPIG FTPYGDSRHW TNKEPLSVPE SRSLRDFISE IKGKTSGSTY LIDMHGWEDK
TIGDSHISRA FQNQFGFVNG CYDGVYQGGF LISWANSIGV RAALIELPQS CYSHSDAVNG
RYLQKCINAV TNLIGGSGGS SSGGSSSSDI TYISNGEVIN VQSFLNVRKG PGTDYDSIGQ
LHQGDKVSIV AKNGTWYKIK YGSGYGYVHS DFVKNDTVLP ITPEENDKDK EQAKNKAIEY
VKNIIGTEIK LPFNTYKTII DGIVEIDFKY GLNSYIFPDA AINLNIEEGK LKANNNAGNL
MLMFLDIYKK KNPLVRFLLN KLIYKIEEGE ISIEINPAEL SIEISIASKL YENKKFEMGN
KVFFSLLFKI NNDEIEKIKK ELGEVAKEVL DELVSLINYL MENADNVFLG VLMVVLVILA
AFYLVPALAA SLGVTAGVTA LSEAIAAILV AVKAMPTLK