Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_B0001 |
Symbol | bcn |
ID | 4206646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008264 |
Strand | - |
Start bp | 551 |
End bp | 3190 |
Gene Length | 2640 bp |
Protein Length | 879 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 642567233 |
Product | bacteriocin |
Protein accession | YP_699920 |
Protein GI | 110804016 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3103] SH3 domain protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 161 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAACA ATATAATTCC AAATGTTAGT TCAGGGGATT TAGTAGGAAG TACACCTACG TTTCCGCCAA ATGCAGTAGT AAGAGGAGAT TTTTTATATC TAAGAGATGT TGATGGTAAT CAAATTCCAG GAAGAACAGT AAGTGATGGA GATGAAATTA CAGTTTTATT TATAAGTAAT GAAAAAAATA TAGTATTAGT TCAATATCCA ACAAGTTCTG GATATAGACA AGGATATGTA ACAAATGCAA GAAGCATAAT AAAATACAAA GACGATTATT CATGGGTAAA TGGTTCAACA CCTGAGCCAG TATATGACTT TGATAAAACA ACACAAATAG GAACATTAGA TCCAAGAGAA AGAGCCGTAG TTCTTTATAA AGTAGATGGA ATGACATATG TTGCTTATGA TACAGGAAAA GGTAAGCTTA CAAAGTCAGG ATTAGTTCAT TATGAAGGAG CTGGTAGTTC TACTGGAGGC GGAAGTTTTA ATGGAGTAGC ACCAGGAGAG GTTGTACCAG GTGGATTCAC ATATGAAAAC AATGCAGAGG TAGTTGGTGA TGAACTATAT CTAAGAGATG CAAATGGTAA TAGAATACCA GGTAGAAGTG TAAGTGTAGG AGATAAAATA ACTGTTTTAG ATGTTAGTTA TAGCAAGCAA TTAGCTTTAG TACAGTATCC AGCTGGCAAT GTAGTAAGAC AGGGTTATGT AACAAATGCA ACTAACTTAA TAAGGTACTT TAATCAAAGT ATGTGGCACA ATGGAAGTAC ACCAGAGGAA GTATTAGATG AAAATGGTGG ACATTTAGGA TCATTAGATC CATATGAATC AGCAACACCA CTATATAAGA AAAATGGAAT GACACATGTT GTTTATAATA CATCCAAAGG ACCTAACACA AAGTCAGGTT ATGTAAAATA TGAAGGTTCA GCAGCTACTA GAGTGGATAT ACCTAGACCA TCAATAACAA ATTCACAAAA AATAGTATAT GGAACAAGTG GAAGAGGAAG AGAATTAGCA GCTTATAAAG TTGGTAATGG AGCTAATTCA TTGATATATG TATGTGCAAT ACACGGATGG GAAGATCACT GGGCAGCAGA TGGTATTGAG TTAACTAGAA TAGGTAATGG ACTTATAGAG CACTTCCAAA ATGCAGGAAC AAACAATTGG TCACTATATA TAATTCCAGT AGCAAATCCA GATGGATTAT CAGAAGGATA TACAAATAAT GGGCCAGGAA GATGTACTAT AGTAGGTGCA GTAGATTGCA ATAGAGATTT CCCAATAGGA TTTACACCAT ATGGAGATTC AAGACATTGG ACAAATAAAG AGCCGTTAAG TGTACCAGAA TCAAGAAGTT TACGTGACTT TATAAGTGAA ATAAAAGGAA AGACATCAGG TTCAACATAT TTAATAGATA TGCACGGATG GGAAGATAAG ACAATAGGAG ATTCACATAT ATCAAGAGCA TTCCAAAATC AATTTGGATT TGTAAATGGA TGTTATGATG GAGTATATCA AGGAGGATTT TTAATATCAT GGGCAAATTC AATAGGAGTA AGAGCAGCCT TAATAGAATT ACCACAATCA TGTTATAGTC ATTCAGATGC TGTTAATGGA AGATATCTTC AAAAGTGTAT AAATGCAGTA ACAAATCTAA TAGGGGGTTC TGGCGGTAGT TCATCAGGAG GAAGTTCATC TTCAGATATA ACTTATATAT CAAACGGAGA AGTAATAAAT GTACAATCCT TCCTAAATGT AAGAAAAGGA CCAGGAACAG ATTATGACTC AATAGGACAG TTGCATCAAG GAGATAAGGT AAGCATAGTA GCTAAAAATG GAACATGGTA TAAAATAAAA TATGGTTCAG GCTATGGTTA TGTACATTCT GATTTCGTTA AAAATGATAC AGTGTTGCCT ATCACGCCAG AAGAGAATGA TAAGGATAAA GAACAAGCTA AGAATAAAGC TATAGAATAT GTTAAAAATA TAATTGGAAC TGAAATTAAG TTACCATTTA ACACATATAA AACAATAATA GATGGAATTG TGGAAATTGA TTTTAAATAT GGATTAAATA GTTATATATT TCCTGATGCT GCAATAAATC TTAATATTGA AGAGGGAAAG TTAAAAGCTA ATAATAATGC AGGAAATTTA ATGTTGATGT TCCTTGACAT TTATAAAAAG AAAAATCCAT TAGTTAGATT TTTACTAAAT AAACTTATAT ATAAAATTGA AGAAGGAGAA ATTTCAATAG AAATTAATCC GGCTGAGCTA TCTATAGAAA TATCTATAGC ATCAAAGTTA TATGAAAACA AAAAGTTTGA GATGGGAAAT AAGGTTTTCT TTAGCTTATT GTTTAAAATT AATAATGATG AGATAGAAAA GATTAAAAAA GAACTTGGAG AAGTCGCAAA AGAAGTATTG GACGAATTAG TAAGTTTAAT AAATTATTTA ATGGAAAATG CAGATAATGT ATTTTTAGGT GTTCTTATGG TTGTATTGGT AATTTTAGCA GCATTTTATT TAGTACCAGC ATTAGCAGCT TCTTTAGGAG TAACAGCAGG AGTAACAGCT TTATCAGAGG CAATTGCAGC GATACTTGTA GCAGTTAAAG CAATGCCAAC ATTAAAATAG
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Protein sequence | MANNIIPNVS SGDLVGSTPT FPPNAVVRGD FLYLRDVDGN QIPGRTVSDG DEITVLFISN EKNIVLVQYP TSSGYRQGYV TNARSIIKYK DDYSWVNGST PEPVYDFDKT TQIGTLDPRE RAVVLYKVDG MTYVAYDTGK GKLTKSGLVH YEGAGSSTGG GSFNGVAPGE VVPGGFTYEN NAEVVGDELY LRDANGNRIP GRSVSVGDKI TVLDVSYSKQ LALVQYPAGN VVRQGYVTNA TNLIRYFNQS MWHNGSTPEE VLDENGGHLG SLDPYESATP LYKKNGMTHV VYNTSKGPNT KSGYVKYEGS AATRVDIPRP SITNSQKIVY GTSGRGRELA AYKVGNGANS LIYVCAIHGW EDHWAADGIE LTRIGNGLIE HFQNAGTNNW SLYIIPVANP DGLSEGYTNN GPGRCTIVGA VDCNRDFPIG FTPYGDSRHW TNKEPLSVPE SRSLRDFISE IKGKTSGSTY LIDMHGWEDK TIGDSHISRA FQNQFGFVNG CYDGVYQGGF LISWANSIGV RAALIELPQS CYSHSDAVNG RYLQKCINAV TNLIGGSGGS SSGGSSSSDI TYISNGEVIN VQSFLNVRKG PGTDYDSIGQ LHQGDKVSIV AKNGTWYKIK YGSGYGYVHS DFVKNDTVLP ITPEENDKDK EQAKNKAIEY VKNIIGTEIK LPFNTYKTII DGIVEIDFKY GLNSYIFPDA AINLNIEEGK LKANNNAGNL MLMFLDIYKK KNPLVRFLLN KLIYKIEEGE ISIEINPAEL SIEISIASKL YENKKFEMGN KVFFSLLFKI NNDEIEKIKK ELGEVAKEVL DELVSLINYL MENADNVFLG VLMVVLVILA AFYLVPALAA SLGVTAGVTA LSEAIAAILV AVKAMPTLK
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