Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_2669 |
Symbol | trmE |
ID | 4205380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 2892502 |
End bp | 2893878 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 642567217 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_699904 |
Protein GI | 110802832 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAGAAT TCGATACTAT TGCTGCTATA GCTACAGCAT TAGGAGAAGG TGGAATAGCT ATAATTAGAG TATCAGGAAA TAAAGCTCTT GAGATTGTAA ATAAAATATT CAGAGGAATA AACGGAAAAG ATTTATTAGA TATAAAACCA TATACTATGA GATATGGTCA TATGATAGAT GAAAATAATG AGATTATAGA TGAAGTTATA GTTAGTTTTA TGAAAGGTCC TAGAAGCTTT ACAGCTGAGG ATACAGTAGA AATAAACTGT CATGGTGGTA TTGTAGCTAC TAATAAAGTT CTACAAAATG TAATAAAAGC TGGTGCAAGA CTTGCTGAGC CAGGTGAATT TACAAAAAGA GCTTTTTTAA ATGGAAGAAT AGATTTAAGC CAAGCAGAAG CGGTTATGGA CATAATAACT GCTAAGACTG AACTTTCAAT GAAATCAGCT ATGACTCAAA GTCAAGGAAG ACTTTCTACT GAGATAAACA ATCTTAGAAA AGAGGCTTTA GATATATTAG CTCTAATTGA ATATGCTGTT GACTTTACAG AAGATGACGA GGAACCAGAT GAAACTATAC CAGTTAAGGT AAAAGAGGAT GTTATAACTC TTAGAGGTAA AGTAAATAAT TTAATTGATA CTGCTGACGA AGGTAAACTT ATTAGAGATG GTTTAAGCAT GGTTATAGTA GGAAAACCTA ACGTAGGAAA ATCATCACTT TTAAATGCTT TATTAAATGA AAATAGAGCT ATTGTAACTG ACATAGCAGG AACAACAAGG GACGTAATAG AAGAATATAT AAATTTAGAC GGAATACCTG TTAGACTAGT AGATACAGCG GGAATCAGAG AAACTGAAGA TGTTGTAGAG AAAATAGGTG TAGAAAAATC TAAAGAAAAA ATCAATGAAG CTGATTTAGT TATACTAATG TTAGATACAA GTAGAGAACT AGATGAGGAA GACAAGGAAA TCATTGATTA CATTAAAGAT AGAAAATACA TAGTACTTTT AAATAAGGTT GATTTAGATA GAAAGTTATC CTCAGAAATT GTGGATAACT TAGAAAATAA AATAGAACTA TCTGCAAAAA CTGGTTTTGG TATAGATGAT TTAAAATCAA AAATAAAAGA CTTATTCTTT AATGGATCAA TTGATGCTGA AAGTGTAATG GTAACTAATA CTAGACATAA AGAGGCTTTA TATAGAGCTT CTGAAAACTT AGATGGTGCA TTAAATGGAC TTAATAATAA TGAGTTTTTA GATTTAGTAT CAATTTATGT TACATCTGCT TTAAGAGCCT TAGGAGAAAT TACTGGAGCA GAGCTAGAGG AAGATTTAGT AAACAAAATA TTTGCAGAAT TTTGTTGTGG AAAATAG
|
Protein sequence | MKEFDTIAAI ATALGEGGIA IIRVSGNKAL EIVNKIFRGI NGKDLLDIKP YTMRYGHMID ENNEIIDEVI VSFMKGPRSF TAEDTVEINC HGGIVATNKV LQNVIKAGAR LAEPGEFTKR AFLNGRIDLS QAEAVMDIIT AKTELSMKSA MTQSQGRLST EINNLRKEAL DILALIEYAV DFTEDDEEPD ETIPVKVKED VITLRGKVNN LIDTADEGKL IRDGLSMVIV GKPNVGKSSL LNALLNENRA IVTDIAGTTR DVIEEYINLD GIPVRLVDTA GIRETEDVVE KIGVEKSKEK INEADLVILM LDTSRELDEE DKEIIDYIKD RKYIVLLNKV DLDRKLSSEI VDNLENKIEL SAKTGFGIDD LKSKIKDLFF NGSIDAESVM VTNTRHKEAL YRASENLDGA LNGLNNNEFL DLVSIYVTSA LRALGEITGA ELEEDLVNKI FAEFCCGK
|
| |