| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2579 |
|---|
| Symbol | |
|---|
| ID | 4205092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2808956 |
|---|
| End bp | 2810428 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642567129 |
|---|
| Product | [Fe] hydrogenase |
|---|
| Protein accession | YP_699826 |
|---|
| Protein GI | 110802004 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATAA AGGATGCTAA CAAGCAATAT ATAAAGTTTG ACACTGCTGT TCAAGTTCTT
AAATATGAGG TTTTAAAAAG GATAGCAGAG AAAGAATTTG ATGGTACTTT AGAAAAAGAA
AAGCTTAATA TAGCAAAAGA AATTGTGGAT GATTTAAAAC CTAATGTAAG ATGTTGCATA
TATAAGGAGA GGGCTATAGT TGAAGAAAGA ATTAAACTAG CTTTAGGTGG ACATGAAAAT
AGAGAAAACA TGATAGAAGT AATAGACATA GCCTGTGATG AATGTCCTGT TAATAGATTT
ATAGTCACTG ATGCATGTAG AGGATGCCTA GCTAAGAAAT GTAGAGATAG TTGTAATTTT
GAAGCTATAA ATTTTGATAA TAGAAAATGC AAAATTGATT ATGAAAAATG TAAGGAATGT
GGAAAATGTA AAGAGGTTTG TCCTTACAAT GCTATAGCTG AGGTAAAAAG ACCTTGCATG
AGAGCATGTA TTCCAAAGGC CTTATCTTAT GATGTTGATA GTAAAAAAGC TGTCATAGAT
GATTCAAAAT GTATTCAATG TGGAGCCTGT GTAGTTGATT GTCCTTTTGG AGCTATAATG
GACAAATCCT ATTTAGTAGA TGTTATAAGA TTACTTAAAG ATGAGAAGAA AGTTTATGCC
ATTGTGGCGC CAGCTATATC ATCTCAATTT AATCATAGTA AGATTGGTAA AGTGATTACT
GCTATAAAAA AATTAGGATT TGAAGATGTG TTTGAAGCAG CTTTAGGAGC AGATTTGGTG
GCTGTTCATG AATGTAATGA ATTTAAAGAA AAAGGTGAAT TAGACTTCAT GACAACAAGT
TGTTGCCCTG CTTTTGTTTC TTATATAGAA AAAAATTATC CAGAGCTTAA GGAGTATATA
TCTAATACTG TATCTCCTAT GGTAGCTATG GCAAGGTTAA TAAAATCTCA AAATAAAGAT
GTTAAAACTG TATTCATAGG ACCTTGTATT GCAAAGAAAA CAGAAGCTAA GAGAAATGAG
GTTAGTGGAG ATGTTGATTA TGTATTGACC TTTGAGGAGC TTTTAGCTTT ACTTGACTCT
AGAAATATTA AAATTGACGA ATGTAAAGAA AGTGATACTA AGCATGGTTC ATTTTATGGA
AGACTTTTTG CTAGAAGTGG AGGAGTTACC GAATCAGTTA AACATCTTAT AGATAGCGAA
GGGATAAAAG TAGATTTTAG ACCTATACTT GGAGATGGAA TTAAGGATTG CGACATAAAA
CTTAGATTAG CAAAACTAAA AAGAGCACAG GGAAACTTTT TAGAAGGAAT GGCTTGCAAA
GGTGGATGTA TAAATGGGCC AGGCTCCTTA AATCATGATA TTAAGAATAG CAAAAAAGTT
GATAAATATG GCGAATTATC CTCTTCTGAG AAGATAAAAG ATACTTTAGT TGATATTAAA
TTTGAGGATT TAAATTTATC TAAAAATGAG TAA
|
|---|
| Protein sequence | MAIKDANKQY IKFDTAVQVL KYEVLKRIAE KEFDGTLEKE KLNIAKEIVD DLKPNVRCCI
YKERAIVEER IKLALGGHEN RENMIEVIDI ACDECPVNRF IVTDACRGCL AKKCRDSCNF
EAINFDNRKC KIDYEKCKEC GKCKEVCPYN AIAEVKRPCM RACIPKALSY DVDSKKAVID
DSKCIQCGAC VVDCPFGAIM DKSYLVDVIR LLKDEKKVYA IVAPAISSQF NHSKIGKVIT
AIKKLGFEDV FEAALGADLV AVHECNEFKE KGELDFMTTS CCPAFVSYIE KNYPELKEYI
SNTVSPMVAM ARLIKSQNKD VKTVFIGPCI AKKTEAKRNE VSGDVDYVLT FEELLALLDS
RNIKIDECKE SDTKHGSFYG RLFARSGGVT ESVKHLIDSE GIKVDFRPIL GDGIKDCDIK
LRLAKLKRAQ GNFLEGMACK GGCINGPGSL NHDIKNSKKV DKYGELSSSE KIKDTLVDIK
FEDLNLSKNE
|
|---|
| |