| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2553 |
|---|
| Symbol | |
|---|
| ID | 4206220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2777748 |
|---|
| End bp | 2779676 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 642567103 |
|---|
| Product | ABC transporter ATPase |
|---|
| Protein accession | YP_699800 |
|---|
| Protein GI | 110803697 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAA TAACTCTTGA AAATATAAGT AAGAGCTATT CAGAAAAAAT TTTAGCTAAT
AATGTATCTT TAGGAATAAA TGAAGGAGAG AAGATTGGTC TTATAGGAGT TAACGGAACT
GGAAAATCTT CTTTCTTAAA AATAGTTGCT GGAGTTGAAG AACCAGACGA AGGAACAGTA
ACAAAGGGAA ATAGAGTAAG AATAGAGTAT CTTGCTCAAA CACCAGATTA TGATGATAAT
GCTACTGTTT TAGAGCAAGT TTTTAAGGGT AACTCAGAGG AAATGAGAAT ATTAAGAGAG
TACGAAGAGT TACTTGAAAA AATAGATAAG GGCGAAGTTA AAGAGAATGA TTCTGAAAGA
TTAATAAAGC TTCAAGGAAA AATAGATGCT TTAAATCTTT GGGATATGGA AAGTGAAGCA
AAGAATGTTT TAACTAAGCT TGGAATAACT AATTTTGAAG AAAAAGTAGG AAATCTTTCT
GGAGGACAAA AGAAGAGAAT AATGCTTGCA GCTGCATTAA TAACTCCTTG TGAATTATTA
ATACTAGATG AGCCTACTAA CCATTTAGAT AATGAAACTA TAAGTTGGTT AGAAGAATAT
TTAAATAGTA GAAAAGGCGC TCTTTTAATG ATTACTCATG ATAGATACTT CCTAGATAGA
GTAACAAACA GAATATTAGA ATTAGATAGA GGTAGATTAT TTAGCTATGA TGGAAACTAT
TCTGTTTTCT TAGAAAAGAA GATGGAGAGA ATAGCCATAG AAAAAGCCAG TGAGGAAAAA
AGACAAAATC TTATGAGAAA AGAACTAGCT TGGGTAAGAA GAGGTGCAAA GGCTAGAACT
ACTAAGCAAA AAGCTAGACT TCAAAGATTT GATGAATTAG TAAATCAAGA AGGATTTATT
GAAAATGAAA ATATAGAAAT CTCTGTTATG GGAACGAGAT TAGGAAAGAA AATAATAGAG
ATAGAACACC TAAATAAAAG ATTTGGTGAT AAAAAGATTG TTGATGATTT TAACTATATA
GTACTAAAAA GTGATAGAAT AGGTATTGTA GGACCTAATG GAATTGGTAA ATCAACACTT
ATGGGAATGA TAGAAGGAAA AGTTAAGCCA GATAGTGGAG AAATAATAAA AGGTGAAACT
GTAAAAATAG CTTGCTTCTC ACAGGAAGAT ACACATATGC ATCCAGAGAT GAGAGCTATA
GATTACATAA AAGAAGCAGG AGAGTACTTA CAAACTGCCA CAGGTGAAAG AATAACTGCA
TCACAAATGT GTGAAAAGTT TTTATTTGAT GGAACACTTC AGTGGACAAT GATAGGTATG
TTATCTGGAG GAGAAAGAAG AAGACTTCAC CTTTTAAGAG TTCTAATGGA AGCCCCTAAT
GTGCTTTTAC TAGATGAGCC TACAAATGAT TTAGATATTG AAACTTTAAA TAGATTAGAA
GATTATTTAG ACGATTTTGG TGGAGTTGTC ATAACTGTAT CCCATGATAG ATATTTCCTA
GATAGAGTTT GTAACAAGAT ATTTTCTTAT GAGGGAAATG GAAAAATAGA TATTTATACT
GGAAACTATG GGGATTATCT TCTAAGCAAA GAAGAAGAGG CTGTTAACAA TAAAGAAAAA
GAAGTGGCTG TGGATAAAAA TAAAAAAGAG TCATCTGTGG ATAAAAATAA AAACAAGGGT
AAAGTATTAA AATTTTCATT TAAAGAACAA AGAGAATTTG AAACTATAGA TGAAGAAATA
ATGACCCTTG AAGAAAAAAT AGAAGAATTA GATTCTTTAA TGGCAAAACA TGCATCAGAG
TATGGTAGAC TTCAAGAACT GATAGAAGAA AAGGCAAATG TTGAAGAAGA ATTAGCATTT
AAATATGAGA GATGGGAATA TCTTAATGAG TTAGCAGCAC AAATAGAAGA AAACAAAAAG
AATAAATAA
|
|---|
| Protein sequence | MNLITLENIS KSYSEKILAN NVSLGINEGE KIGLIGVNGT GKSSFLKIVA GVEEPDEGTV
TKGNRVRIEY LAQTPDYDDN ATVLEQVFKG NSEEMRILRE YEELLEKIDK GEVKENDSER
LIKLQGKIDA LNLWDMESEA KNVLTKLGIT NFEEKVGNLS GGQKKRIMLA AALITPCELL
ILDEPTNHLD NETISWLEEY LNSRKGALLM ITHDRYFLDR VTNRILELDR GRLFSYDGNY
SVFLEKKMER IAIEKASEEK RQNLMRKELA WVRRGAKART TKQKARLQRF DELVNQEGFI
ENENIEISVM GTRLGKKIIE IEHLNKRFGD KKIVDDFNYI VLKSDRIGIV GPNGIGKSTL
MGMIEGKVKP DSGEIIKGET VKIACFSQED THMHPEMRAI DYIKEAGEYL QTATGERITA
SQMCEKFLFD GTLQWTMIGM LSGGERRRLH LLRVLMEAPN VLLLDEPTND LDIETLNRLE
DYLDDFGGVV ITVSHDRYFL DRVCNKIFSY EGNGKIDIYT GNYGDYLLSK EEEAVNNKEK
EVAVDKNKKE SSVDKNKNKG KVLKFSFKEQ REFETIDEEI MTLEEKIEEL DSLMAKHASE
YGRLQELIEE KANVEEELAF KYERWEYLNE LAAQIEENKK NK
|
|---|
| |