| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2493 |
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| Symbol | mfd |
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| ID | 4205077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2706741 |
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| End bp | 2710229 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 642567043 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_699740 |
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| Protein GI | 110803113 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCCCT TATTAAATAG TGAGGCTTTT CAAAAGGTTA AATCTTTTAT GGAAAGCGGA
AATTATCCAG TAATGATAAA TGGTTTATCT GATTCAGGAA AATCATATTT TATAAATGGT
ATATATGAGG AATCAGATAA GCCTATAGTT GTTGTTACGC ATAATGATAT TGAAGCTAGA
AATATATACG AGGATTTATC TTTTTACTTA CCTAATGTGT ATTATTTACC TTCAAGAGAG
ATTGTGTTTT ACAATATAGA TGCTATTTCT GGTGATTTAA GATGGGCAAG GTTAAAGGTT
ATAAAGGAAA TGCTAAGAAG CACTAAAAAA ATTATAGTTA CGTCTATAGA TGCTTTTGTA
GCAACTTATA CACCTAAGGA GCTTTATAAA AGTCATATAT TAAAAATTAA AGTTGGAGAT
GAAGTCGATT TTAAAGAGAT TTCTCATAAA CTTATTGAAT CAGGTTATGA AAGGTTAGAA
ACAGTTGAAG GCAAAGGTGA ATTTTCATTA AGAGGAGGAA TATTAGATGT ATTTCCTCCT
AATTCTGCTA ATCCTTTTAG AATAGAGTTA TTTGGAGATG AAGTTGATTC TATTAGAACC
TTTAATGTAG AATCACAAAG AAGTATAGAA AAGGTAAAGA GAGCAGAAAT ATTCCCTGCT
AAGGAAGTTA TATTAAGTAA AGAAACTATA GAACATGCCA TAGAAAAGAT GAGAAAAGAA
CTTTCTGACT TTGAAAATAA AGTTTCTGAT AAGGAAATAA AAGATAAACT TAGAAAATTA
ATAGAGAAAA ATATAGAATC ATTACAAGAA AACTGGAGCT TTGAAACTAT AGATAGTTAT
CTTCCTTTTT TCTTTGATAA ACCAGCAACC TTATTTGATT ATTTAAATAA TTATACCTTT
ATAATTGATG ATGCTAAAAG ATGTAAGGGA AAGCTAGAAA GTACTGTATT TGAGTTTACT
GAAAACTATG AAGCCTTCCT AGAAAGAGGA AGCATATTAC CTTCTCAAAT TAATTTAAGC
TTAAGTGCTG AAGTGGTAGA AGAATCATTT AAGAGGAACA AAGTAATAAA TCTAGTTCCT
TTTGGAGATG GTGGATTTAT AGAATCATTT AATAAAGTTG AAGTAAAACA AAGTACTAAA
AGTGGATATC AAGGTCAACT TGATATGCTT ATAGATGATA TAAAAGAGAA TAAGAAAAAT
GGATTTAGAA CTTTAATACT TTCAGGAACA AGACCAAGGG GAGAAAGATT AGTAAATACT
TTAAGAGAAT TAGAGATAGA GAGTGTATAT AAAGATGAAG TTGATGAAAT AAATAATGGA
GAAGTTGTAA TAACCTTTGG AGAGCAGAAT AAAGGATTTG AGTACCCTGA CATAAAACTT
TGTTTAATAT CAGATAAGAG TGTTTTTGGT GAGGGTAAAA GAGTCAAAAA AGCTAAGAGA
AAAAAATCAA AAGGTGTATC TAAAATTAAG AGTTTTGCTG AGTTAAAGCC AGGAGACTAT
GTAGTTCATG TAAATAGTGG TATAGGTGTC TATAAAGGAA TAAAACAAAT AGAAGTTCAA
GGACATAAAA GAGATTATTT AGATATTGAA TATTCAAAAG GTGATAAGTT ATATGTACCA
GTTGAGCAAT TAGACTTAGT TCAAAAATAC ATTGGATCAG ATAGTGCTTC TCCTAAGATA
AGTAAATTAG GAGGAAATGA GTGGCAAAAA GCTAAGGCTA AGGTAAGAAA GTCCATAAAT
GACATAGCTG GTGACTTAGT AAAATTATAT GCTGAGAGAT CTACTGTAAA GGGATATAAA
TTCTCAAAGG ATACTCAATG GCAAAAGCAA TTTGAAGATG AATTTCCATA TGAAGAAACA
CCGGACCAAT TAGCGGCTAT TGAAGATATA AAGAGCGATA TGGAATCAAA CAAGGTTATG
GATAGATTAC TTTGTGGTGA TGTTGGATAT GGAAAAACTG AGGTTGCTAT TAGAGCTGCA
TTTAAGGCTG TAATGGAAGG GAAGCAAGTA GCATTTTTAG TTCCTACAAC AATATTAGCA
GAGCAACATT ATAAGAATAT GAAAAGAAGA TTCGCAGGAT TCCCTATAAC TATTGATATG
ATAAGTAGAT TTAGGACTAA AAAGCAACAA ACAGAAACTT TAAAAGCTTT AAAAGAAGGA
AATGTTGATA TATTAATAGG AACTCATAGA CTTGTTTCTA AAGATATTCA ATTCAAGGAT
TTAGGGCTTC TTATTGTGGA TGAAGAGCAA AGATTTGGAG TAGCTCAAAA AGAAAAGATT
AAGAGTTTTA AGAAGAATGT GGATGTTCTT ACTTTAAGTG CAACGCCAAT ACCTAGAACT
CTTCATATGT CACTTACAGG GGTAAGAGAT ATTTCTGTAA TAGAGACTCC ACCAGAGAAT
AGATATCCTA TTCAAACCTA TGTTGTAGAA CAAAATGATC AACTTATTAG AGATGCAATT
TTAAGAGAAA TTAATAGAGG TGGTCAAGTT TATTTTGTTC ATAATAGAGT TGAAAGTATT
CAAGAGGTAG CTAATTATAT ACAGGAGCTT GTTCCAGAGT GTAAGGCAAC TGTAATTCAT
GGACAAATGA CAGAGAGACA GTTAGAAACT GAAATGATAG ACTTTATGGA AAGAAAGTAT
GATGTTTTAG TATGTACTTC CATAATAGAA ACAGGAATTG ATATTTCAAA TGTAAACACA
ATGATAGTAA ATGACGCAGA TAAAATGGGA CTTTCTCAGC TTTATCAATT AAGAGGAAGA
GTTGGTAGAA GTAACAAGGT TGCTTATGCA TATTTCCTAT ATCAAAGAGA TAAGGTTTTA
ACTGAGGTGG CAGAGAAGAG ACTTAAGGCC TTAAAAGATT TTACAGAGCT TGGATCAGGA
TTTAAAATAG CCATGAGAGA CCTTGAAATA AGAGGAGCTG GAAATATGAT GGGTTCAGCT
CAGCATGGGC ATATGGCGGC TATAGGATAT GATTTATACT GTAGAATGTT AGAAGATACT
ATAAAAATTG TTAAGGGTGA AATAGAAAGA GAACCAGTAG AGACAACTGT AGATTTAAAA
GTGGATGCAT TTATTCCTTC AAGTTATATA AAAGATGAAA TTCAAAAGAT TGAAGTATAT
AAGAAAATTG CTGCTATAGA AAATGAAGAG GATTATGAAT ATGTTAGAGA GGAATTAGAA
GATAGATTTT CTAATATACC AAATACAGTT TATAATCTTA TGGACATAGC TTATATAAAA
AGCAAAGCTA AACTTTTAAA TATTGAAGAG ATAAAAGAAA AGAATGAAGA TATAATATTT
ATATTTGAAA GTAGAGAAAG AACAGATAAG AGAATATTTA AAATACTTTT AGAAGAATAT
AAAGATGATA TATTAATTGA ATTTGGAGAT AAACCAACAA TTTTATATAG AGTGAAGGAC
AAGAAAAAAG AAGATGTTTT ATCTATTTTT AAAGAGATGT TAGATAAGTT AATAGCTTTA
AATAATTAA
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| Protein sequence | MAPLLNSEAF QKVKSFMESG NYPVMINGLS DSGKSYFING IYEESDKPIV VVTHNDIEAR
NIYEDLSFYL PNVYYLPSRE IVFYNIDAIS GDLRWARLKV IKEMLRSTKK IIVTSIDAFV
ATYTPKELYK SHILKIKVGD EVDFKEISHK LIESGYERLE TVEGKGEFSL RGGILDVFPP
NSANPFRIEL FGDEVDSIRT FNVESQRSIE KVKRAEIFPA KEVILSKETI EHAIEKMRKE
LSDFENKVSD KEIKDKLRKL IEKNIESLQE NWSFETIDSY LPFFFDKPAT LFDYLNNYTF
IIDDAKRCKG KLESTVFEFT ENYEAFLERG SILPSQINLS LSAEVVEESF KRNKVINLVP
FGDGGFIESF NKVEVKQSTK SGYQGQLDML IDDIKENKKN GFRTLILSGT RPRGERLVNT
LRELEIESVY KDEVDEINNG EVVITFGEQN KGFEYPDIKL CLISDKSVFG EGKRVKKAKR
KKSKGVSKIK SFAELKPGDY VVHVNSGIGV YKGIKQIEVQ GHKRDYLDIE YSKGDKLYVP
VEQLDLVQKY IGSDSASPKI SKLGGNEWQK AKAKVRKSIN DIAGDLVKLY AERSTVKGYK
FSKDTQWQKQ FEDEFPYEET PDQLAAIEDI KSDMESNKVM DRLLCGDVGY GKTEVAIRAA
FKAVMEGKQV AFLVPTTILA EQHYKNMKRR FAGFPITIDM ISRFRTKKQQ TETLKALKEG
NVDILIGTHR LVSKDIQFKD LGLLIVDEEQ RFGVAQKEKI KSFKKNVDVL TLSATPIPRT
LHMSLTGVRD ISVIETPPEN RYPIQTYVVE QNDQLIRDAI LREINRGGQV YFVHNRVESI
QEVANYIQEL VPECKATVIH GQMTERQLET EMIDFMERKY DVLVCTSIIE TGIDISNVNT
MIVNDADKMG LSQLYQLRGR VGRSNKVAYA YFLYQRDKVL TEVAEKRLKA LKDFTELGSG
FKIAMRDLEI RGAGNMMGSA QHGHMAAIGY DLYCRMLEDT IKIVKGEIER EPVETTVDLK
VDAFIPSSYI KDEIQKIEVY KKIAAIENEE DYEYVREELE DRFSNIPNTV YNLMDIAYIK
SKAKLLNIEE IKEKNEDIIF IFESRERTDK RIFKILLEEY KDDILIEFGD KPTILYRVKD
KKKEDVLSIF KEMLDKLIAL NN
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