| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2407 |
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| Symbol | rpoC |
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| ID | 4205410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2624347 |
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| End bp | 2627883 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 642566955 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_699670 |
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| Protein GI | 110802145 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0119214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCGAAT TAAATAATTT TGATGCTTTA CAAATCGGGT TAGCATCTCC AGAACAAATT
AGAGAGTGGT CTAGAGGAGA AGTAAAGAAA CCTGAAACTA TTAACTATAG AACGTTAAAA
CCTGAGAGAG ACGGATTATT CTGTGAAAGA ATATTCGGAC CTATAAAAGA CTGGGAATGT
CACTGTGGAA AATACAAAAG AGTTAGATAT AAAGGTATTG TATGTGACAG ATGTGGTGTT
GAAGTAACTA AATCTAAAGT TAGAAGAGAG AGAATGGCTC ACATTGAATT AGCTGCGCCA
GTATCTCATA TATGGTATTT CAAAGGAATA CCTTCAAGAA TGGGATTAAT CCTTGATATG
TCACCAAGAG CTTTAGAAAA AGTTCTATAT TTTGCATCAT ATATAGTTAT AGATCCAAAA
GAAACTTCAT TATTAAAGAA ACAACTTCTT AATGAGAAAG AATATAGAGA AGCGTGTGAC
AAATATGGTG AAGAGAGCTT TGTAGCTGGA ATGGGTGCAG AAGCTATAAA AACTTTATTA
TCAGAAATAG ACTTAGAAAG AACTGCTGCT GAACTTAAAG AAGAATTAAA GCAAAGCACA
GGTCAAAAGA AAGTTAGAAT AATAAGAAGA TTAGAAGTTG TAGAATCATT CAAATCATCA
GGAAATAAAC CTGAATGGAT GGTAGTAGAT GTAATACCAG TTATACCACC TGATTTAAGA
CCTATGGTCC AATTAGATGG AGGTAGATTT GCTACTTCAG ATTTAAATGA TTTATACAGA
AGAGTTATAA ATAGAAATAA CAGACTTAAG AAGTTATTAG ACCTTGGCGC TCCTGACATA
ATAGTTAGAA ACGAAAAGAG AATGCTTCAA GAGGCTGTAG ATGCTTTAAT AGATAACGGT
AGAAGAGGAA GACCTGTAAC TGGTCCTGGA AACAGACCTC TTAAATCATT ATCAGATATG
CTTAAAGGTA AGCAAGGAAG ATTCAGACAA AACCTTCTTG GTAAGAGGGT TGACTATTCA
GGAAGATCAG TTATCGTTGT TGGTCCTGAA TTAAAAATGT ATCAATGTGG TCTTCCAAAA
GAAATGGCTT TAGAATTATT CAAGCCTTTC GTTATGAAGA AATTAGTTGA AGACGGAGTT
GCTCATAACA TAAAGAGTGC TAAGAGAATG GTTGAAAGAG TAATGCCACA AGTATGGGAT
GTACTTGAAG AAGTTATAGC AGACCATCCA GTATTACTAA ACAGAGCACC TACTCTACAT
AGACTAGGTA TTCAAGCATT CCAACCAGTA TTAGTTGAAG GTAGAGCTAT AAAACTTCAT
CCACTTGTAT GTACAGCATA TAACGCTGAC TTCGATGGAG ACCAAATGGC TGTTCACGTA
CCTTTATCAG TTGAAGCTCA AGCAGAAGCT AGATTTTTAA TGCTTGCAGC AGGTAATATA
ATGAAACCTT CTGATGGTAG ACCAGTTTGT GTACCTACTC AGGATATGGT TCTTGGTTCA
TATTACTTAA CAATGGATAA AGACGGAGCT AAAGGTGAAG GAAAATACTT CGCATCATTT
GATGAAGTAA TAATGGCTTA TCAATTAAAA GAAGTTGATA TTCATGCTAA GATTAACGTT
AAAGTTACTA AAGAAATAGA CGGAGAGCTT AAGTCAGGAA TAATCAAAAC AACTCCAGGA
TTTATAATAT TCAATGAATG TATACCTCAA GACTTAGGTT TTGTAAATAG AGAAAATCCT
GAAGAAATGT TCAATTTAGA AATAGATTTC TTAATAACTA AAAAGTCATT AGGAAAAATA
ATAGATAAAT GTTACTTAAA GCATGGTCCA ACTAAGACTT CAATAATGCT TGATAACATA
AAAGCAACAG GATATCATTA TTCATCAATT GGAGCTGTTA CAGTTGCTGC TTCTGATATG
ATAGTTCCTC AAAAGAAATA TGAGCTATTA AAAGAAGCTG ATGAAACTGT AGATAAGATT
GAAAAAATGT ATAGAAGAGG TCTTATATCT GAAGATGAAA GATATGAAAG AGTTATAGAA
AAATGGACTG AGACTACTGA GGAAGTTGCG GATACATTAA TGAATAGTTT GGATAAATTT
AACCCAATAT TCATGATGGC AGACTCAGGA GCCAGAGGAT CTAAGTCACA GATCAAACAG
TTAGCTGGTA TGAGAGGACT TATGGCGAGT CCATCAGGTA AAATCATCGA GTTACCAATC
AGAGCATCAT TTAGAGAAGG TCTTGACGTA TTAGAGTACT TCATATCTAC TCACGGAGCT
AGAAAAGGTA ACGCCGATAC AGCACTTAAA ACTGCTGACT CAGGTTACTT AACAAGAAGA
CTTGTTGACG TAAGCCAAGA TGTTATAGTA AGAGAACACG ACTGTGGAAC TCAAAATGGT
ATTTACGTTG AAGAAATAAA AGAAGGTTCA GAAGTAGTTG AACAATTAGC TGAAAGATTA
ACAGGAAGAT ATACTGCAGA AGATGTTTTC CATCCAGAAA CTGGAGAGCT TTTAGCTGCA
AAAGATACTT ACATGGATCC AATTTTAGCT GAAAAAATAG CTGACACTGG AATTCAAAAA
GTAAAAATAA GATCAGTATT TACATGTGAT TCTAAGGTTG GAGTATGTAC TAAGTGTTAT
GGTATGAACA TGGCAACATC ATATAAAATT AATATTGGTG AAGCTGTTGG TATCGTAGCT
GCTCAGTCAA TAGGAGAACC AGGAACACAG CTTACAATGA GAACATTCCA TACAGGTGGA
GTTGCTGGAG CAGATATAAC TCAAGGTCTT CCAAGGGTTG AAGAGTTATT CGAAGCAAGA
AAACCAAAAG GATTAGCAAT TGTAAGTGAA GTTGCAGGTA CTGTAAGAAT AGAAGAGACT
AAGAAGAAGA GAACAGTTTA TGTTGTTACT GATTCAGGAG AAGAATATAG CTATGACATA
CCATTTGGAT CAAGATTAAA AGTTAAAGAT GGTATAGCTA TTGGAGCTGG AGATGAAATA
ACAGAAGGTT CAGTTAACCC ACATGATATC ATGAGCATTA AAGGTGTTGA TGGTGCAAGA
GAATACTTAC TTTCAGAAGT TCAAAAAGTT TACAGACTTC AAGGGGTTGA TATCAACGAT
AAGCACTTAG AAGTTGTAGT TAGACAAATG ACTAGAAAGA TAAAAGTAAC AGAGCAAGGT
GATACTAATT TATTACCAGG TGTAATGATT GATATGTTCG ATTTCAGAGC TGAAAATGAA
AGAGTTGAAA GCTTTGGAGG AGAAAAAGCT CAAGGAGATA TAGTTCTTCT TGGTATTACT
AAAGCAGCTC TTGCTACAGA TAGTTTCTTA TCAGCAGCAT CATTCCAAGA AACAACAAGA
GTTCTTACTG ATGCAGCAAT TAAAGGAAAA ATTGATCCTC TTGTTGGATT AAAAGAAAAT
GTTATAATTG GTAAGTTAAT TCCAGCAGGT ACAGGTATGA TGAAGTATAG ATCATTAAAA
TTAAATACTG AAAACAGTAA TCAAGAGACT GAAACAATAA TTGAGATTGA AGAATAA
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| Protein sequence | MFELNNFDAL QIGLASPEQI REWSRGEVKK PETINYRTLK PERDGLFCER IFGPIKDWEC
HCGKYKRVRY KGIVCDRCGV EVTKSKVRRE RMAHIELAAP VSHIWYFKGI PSRMGLILDM
SPRALEKVLY FASYIVIDPK ETSLLKKQLL NEKEYREACD KYGEESFVAG MGAEAIKTLL
SEIDLERTAA ELKEELKQST GQKKVRIIRR LEVVESFKSS GNKPEWMVVD VIPVIPPDLR
PMVQLDGGRF ATSDLNDLYR RVINRNNRLK KLLDLGAPDI IVRNEKRMLQ EAVDALIDNG
RRGRPVTGPG NRPLKSLSDM LKGKQGRFRQ NLLGKRVDYS GRSVIVVGPE LKMYQCGLPK
EMALELFKPF VMKKLVEDGV AHNIKSAKRM VERVMPQVWD VLEEVIADHP VLLNRAPTLH
RLGIQAFQPV LVEGRAIKLH PLVCTAYNAD FDGDQMAVHV PLSVEAQAEA RFLMLAAGNI
MKPSDGRPVC VPTQDMVLGS YYLTMDKDGA KGEGKYFASF DEVIMAYQLK EVDIHAKINV
KVTKEIDGEL KSGIIKTTPG FIIFNECIPQ DLGFVNRENP EEMFNLEIDF LITKKSLGKI
IDKCYLKHGP TKTSIMLDNI KATGYHYSSI GAVTVAASDM IVPQKKYELL KEADETVDKI
EKMYRRGLIS EDERYERVIE KWTETTEEVA DTLMNSLDKF NPIFMMADSG ARGSKSQIKQ
LAGMRGLMAS PSGKIIELPI RASFREGLDV LEYFISTHGA RKGNADTALK TADSGYLTRR
LVDVSQDVIV REHDCGTQNG IYVEEIKEGS EVVEQLAERL TGRYTAEDVF HPETGELLAA
KDTYMDPILA EKIADTGIQK VKIRSVFTCD SKVGVCTKCY GMNMATSYKI NIGEAVGIVA
AQSIGEPGTQ LTMRTFHTGG VAGADITQGL PRVEELFEAR KPKGLAIVSE VAGTVRIEET
KKKRTVYVVT DSGEEYSYDI PFGSRLKVKD GIAIGAGDEI TEGSVNPHDI MSIKGVDGAR
EYLLSEVQKV YRLQGVDIND KHLEVVVRQM TRKIKVTEQG DTNLLPGVMI DMFDFRAENE
RVESFGGEKA QGDIVLLGIT KAALATDSFL SAASFQETTR VLTDAAIKGK IDPLVGLKEN
VIIGKLIPAG TGMMKYRSLK LNTENSNQET ETIIEIEE
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