Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_2370 |
Symbol | rpoA |
ID | 4204179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 2602210 |
End bp | 2603157 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 642566919 |
Product | DNA-directed RNA polymerase subunit alpha |
Protein accession | YP_699634 |
Protein GI | 110802435 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.12041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGAAA TAGAAAAGCC AGTAATTCAA TGTGTTGAAT CAAACGATAA CGGAACATAT GGTAAGTTTG AGATAGAACC ATTAGAAAGA GGTTATGGAA TAACTCTTGG TAATGCATTA AGAAGAATAT TACTTTCTTC TTTACCTGGA GTGGCTCCAA CTTCAGTTAA AATAGATTCA GTTCTTCATG AGTTTTCAAC AATAACAGGT GTTAAAGAAG ATGTTACAGA GATAATCTTA AATCTTAAAA TGTTAGCACT TACTATGGAA GGTGAAGGAC CAAAAACTAT TTATATTGAT GCTCAAGGAC CAGGTGTTGT TACTGGAGCA GATATAAAAA CAGATGGTGA TGTAGAAGTT GTAAACAAAG ATCTACATAT CGCTACATTA GACAACGATG GTAAGTTATA TATGGAAATC GTAGTTAATA GAGGAAGAGG ATATGTTACT CAAAATAAAA ATAAAACAGA AGACCTTCCA TTATCAGCTA TTGCTATAGA TTCTATATAC ACTCCTGTAA AGAGAGTTAA TTTCTCTGTT CAAAATACAA GAGTTGGTCA AATTACTGAC TATGATAAAC TTACATTAGA AATTTGGACT AATGGAACTA TAAGAATAGA AGAAGCGATT TCATTATCAG CTAAAATTCT TATAGAGCAC TTCAAATTAT TCATGACTTT AACTGACAAC GCTAATGATG TTGAGATAAT GATTGAAAAA GAAGAAGATA AAAAAGAAAA AGCTTTAGAG ATGACTATAG AAGAGCTTGA CTTATCAGTA AGATCATATA ATTGCTTAAA GAGAGCAGGT ATAAACACTG TTCAAGAGCT TGCGGGCAAG AGCATGGATG ATATGATGAA AGTTAGAAAC TTAGGTAAGA AATCTCTAGA AGAAGTAGAA AGAAAGTTAA ACGAGTTAGG CTTAAATTTA AGACTAAATG ACGAGTAG
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Protein sequence | MLEIEKPVIQ CVESNDNGTY GKFEIEPLER GYGITLGNAL RRILLSSLPG VAPTSVKIDS VLHEFSTITG VKEDVTEIIL NLKMLALTME GEGPKTIYID AQGPGVVTGA DIKTDGDVEV VNKDLHIATL DNDGKLYMEI VVNRGRGYVT QNKNKTEDLP LSAIAIDSIY TPVKRVNFSV QNTRVGQITD YDKLTLEIWT NGTIRIEEAI SLSAKILIEH FKLFMTLTDN ANDVEIMIEK EEDKKEKALE MTIEELDLSV RSYNCLKRAG INTVQELAGK SMDDMMKVRN LGKKSLEEVE RKLNELGLNL RLNDE
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