| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2331 |
|---|
| Symbol | |
|---|
| ID | 4206343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2552800 |
|---|
| End bp | 2554818 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 642566881 |
|---|
| Product | glycogen debranching protein |
|---|
| Protein accession | YP_699596 |
|---|
| Protein GI | 110803375 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3408] Glycogen debranching enzyme |
|---|
| TIGRFAM ID | [TIGR01561] glycogen debranching enzyme, archaeal type, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTG GAAAAAAAGA TTGGACTAGT TATGATAGAG GGATAGAAAA AGAGTGGATG
CTTACTAATG GTATAAGTGG ATTTTGTGGA GGAACTGCTA TAGGAGCAAA CTGTAGAAAA
TATCAAGGGT TATTAGTAGC GTGTACTAAT TCTCCAGAAG AGAGATATAT GATTCTTTCA
AATTTAAATG AGGAAATAAA TATTGATGGA AAGCTTCACC AGTTGAGTTC TTGTAAATAT
ACAGATAAAA TAGTGGATGG ATTTAAAAAC CTTCAAGGAT TTTATTATGA TGGACTACCT
CATTTTAGAT TTTTTGTAGA TGGAGTAGTT ATAAATAAAA AGATTGCTAT GGAATATGGA
AAGAACACTG TAGTAATAGA ATATGACATA TTAAATGGAA GTAAAGAATC AAAAATAAAT
ATTAAACCAC TATTTACTTT TAGGAATCCA GGAATATGTA GTGGAGAAGA AAATTTGAAA
TTTTCAAAAA CTGTGGATAA AAATAAAATT CAACTTACTC CACAGTTAAA TAAGGACATA
AATATAAGAT TTTTTACCTA TGGTGGAAAA ATATTAGATA AAACTGATAA AATTGTTGAT
AAAATTTATT ATGATGTGGA TAAAAGTACA GGTGATAAGT TTGTGGATAA ATATTACATT
CCAGGAACTG TTGAAATAAA TTTAAATCCT AATGAAAGAA AAAAGGTTTA TTTACTTTGT
ACTATAGAAA ATGAAGAGAA TTTTGACTGT GAAAAGATAA TAGAAAATGA AGAGAAAAGA
ATAAATAATC TTAAAAATAC CTTCGCTGAT TCAAGAATTT TAGCTAAATA TCTTCCAATT
GCAGGGGATC AATTTATAGT AAATAGAGAG TCTATAAAGG GAAAAACAAT TTTAGCTGGC
TACCCTTGGT TTTTAGATTG GGGAAGAGAT GCTATGATTG CTATTAATGG ATTAACTTTA
TCAACTGGAA GATTAGAAGA TGCTAAAGAT ATTATAAGAA GTTTTAGCCT TTATGAGAAA
GATGGATTAA TACCAAATAT GTTCCCTGGA AAAGGACAAG AGCCACTTTA TAATACAGTA
GATGCTTCCT TATGGTTTAT AAATGCAGTT TATAATTATT TGCTATATGC TAATAGTTAC
GAAGCTTTAG AGTTTGTTGA GAAAGAAGTT TATAAAACTA TAAAAAATAT AATAAAGGCT
TATAAAGAAG GTACTAAGTT CTCAATAAAA ATGGATGAAG AGGATTATTT AATAAATGCT
GGTTCAGGAT TAGACCAAGT AACCTGGATG GATGTTAGAG TAAATGGCAT AGTGGTTACT
CCAAGACATG GTAAACCAGT TGAAATAAAT GCTTTATGGT ATAATGCCTT AAAAATAGCA
GCCTTATTAA AAAATAAGTT TGAAAAAGAA GAAAAGAATG AGTATGAAGA ATTAGCTAAA
AAGGTTAAAG ATTCATTTAC TAAGACTTTT TGGAATGAGG ATAGAAAGTA TCTTTACGAT
GTTGTAAATA ATCATGAGAA GGATGATAGT TTAAGACCTA ATCAGATTTG GGCAGTATCA
TTACCTTTTA CAATGTTAGA TAGAGAAAAA GAAAAGCATA TTGTTCAAAA GGTTTTTGAA
GAATTATACA CTCCTTATGG ATTAAGAAGT TTAAGTAGAA ACAATAAGGA CTATCATGGA
ATTTATATAG GAAAGCTTTT TGATAGAGAT ATGGCTTATC ATCAAGGAAC AACATGGGCA
TTTCCTCTTG GAGGATTTTT CACAGCTTAC TGTAAGGTAA ATGATTATTC TAAAGAAGCT
GTAGATTTAA TTGATTCTTT AATGAGAGAT ATGGAAGATC ATATTAAAGA TCAATGCTTA
GGAAGTATTG CTGAAATTTT CGATGGTGAT AATCCTTATA AAGCTAGAGG ATGCTATGCT
CAAGCTTGGA GTGTTGGAGA AATGCTTAGA GTTTATTATG AGGATATTCT AGGAAACTAT
AAAAAATTAA AAAAAGTCCA CAAAGATATA TTTATATAA
|
|---|
| Protein sequence | MKFGKKDWTS YDRGIEKEWM LTNGISGFCG GTAIGANCRK YQGLLVACTN SPEERYMILS
NLNEEINIDG KLHQLSSCKY TDKIVDGFKN LQGFYYDGLP HFRFFVDGVV INKKIAMEYG
KNTVVIEYDI LNGSKESKIN IKPLFTFRNP GICSGEENLK FSKTVDKNKI QLTPQLNKDI
NIRFFTYGGK ILDKTDKIVD KIYYDVDKST GDKFVDKYYI PGTVEINLNP NERKKVYLLC
TIENEENFDC EKIIENEEKR INNLKNTFAD SRILAKYLPI AGDQFIVNRE SIKGKTILAG
YPWFLDWGRD AMIAINGLTL STGRLEDAKD IIRSFSLYEK DGLIPNMFPG KGQEPLYNTV
DASLWFINAV YNYLLYANSY EALEFVEKEV YKTIKNIIKA YKEGTKFSIK MDEEDYLINA
GSGLDQVTWM DVRVNGIVVT PRHGKPVEIN ALWYNALKIA ALLKNKFEKE EKNEYEELAK
KVKDSFTKTF WNEDRKYLYD VVNNHEKDDS LRPNQIWAVS LPFTMLDREK EKHIVQKVFE
ELYTPYGLRS LSRNNKDYHG IYIGKLFDRD MAYHQGTTWA FPLGGFFTAY CKVNDYSKEA
VDLIDSLMRD MEDHIKDQCL GSIAEIFDGD NPYKARGCYA QAWSVGEMLR VYYEDILGNY
KKLKKVHKDI FI
|
|---|
| |