Gene CPR_2245 details

Gene Information

• Locus tag: CPR_2245
• Symbol: ligA
• ID: 4206049
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2459139
• End bp: 2461127
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 642566797
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_699521
• Protein GI: 110803876
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAAGA AAAAATTAAT AGAAGAGTTA GTTGAAGAGT TAAATAAATA TGCTTATGAA 
TATTATGTTT TAGGAAATTC TTCAGTGACA GATAAAGATT ATGATAAAAA ATACTATGAA 
TTAGTAGATC TAGAAAAGGA AACAGGATAT AAATTACCCT ATTCACCTAC TCAAAGAGTT 
GGTGATGTAA TTCTTCCTGA GTTTAAAAAA TACACTCATA AAGCTAGACT TTGGAGTTTA 
GACAAAGCTC AAACTTTAGA GGAAATTAGA GAGTGGCATA ATAGAAATGT TAAATTCCTT 
GAAGAATATA ATAGAACTTC AGATGAAGAA TTACCACCAT TAAAATATAT TTTAACTAAA 
AAGTTTGATG GATTAACAAT TAATCTTTCC TATGATGAAA ATGGAGTATT AATTACTGGA 
GCAACTAGAG GAACTGGGGC TATTGGTGAA GATGTGACAG CTCAGGTTAA AACTATAAAA 
TCAATTCCAT TAAAAATTGA TTGTCATGAT TTTCTAGAAA TTCATGGAGA GGCTATTATG 
ACTACAGAAG CCTTTGAAAA ATATAATAGT GAAGCAGACA CTCCTCTTAA GAATTTAAGA 
AATGGAGCAG CGGGAGCTTT AAGAAATTTA AATGTAGCAG AGACAGCTAA AAGAAATTTA 
TCAGCTTTCT TCTATGATGT TGGATATAAG GAAGGAGCTC CCTTTAAAAC TTATATGGAA 
ATGTTAAATT TCATAAAAAC TAAGGGATTT CCAATGGATG ATTATATTAG GGAATGCAAA 
ACTTTAGATG AAATTCAAAA AGAAATTGAT TATATAAGAG ATATAAGGTT TGATTTAAAT 
TATGATATAG ATGGATTAGT TATAGCTATA GATGATATAA GAACTAGAGA ACTTTTAGGA 
TACACAGTTA AATTTCCTAA GTGGGCTATT GCATATAAAT TTGAAGCACA GGAGGCTACA 
ACTAAGCTTT TAGATGTTGA ATGGAATGTA GGTAGAAGTG GAAGAGTATC ACCAACAGCT 
ATCTTAGAGC CAGTAGAGTT AGCAGGAGTT ACTGTTAAGA GGGCTACATT AAACAATATG 
GATGATATAG CTAGAAAGGG AGTAAGATTA GGAGCTGAAG TATTTGTAAG AAGAAGCAAT 
GATGTTATTC CAGAAATAAT GGGCGTAGTT CCTGAAAGCT TAGAAGGTAC AAAGGAAATT 
GAAGAGCCAA AGGTATGTCC AGCTTGTGGA GCACATTTAG TTCATGAAGG AGTTCATATC 
TATTGTGAAA ATACTCTAGG ATGTAAGCCT CAAATGGTTA AAACTATAGT TCACTTTGCG 
GGTAGAGAAG CTATGAACAT AGCTGGTTTT TCAGAAAGAA CAGCAGAGCA ATTATTTGAA 
AAGCTTGATA TAAGAGATAT ATCAGATCTT TATAAATTAG AATATGAAAA ATTATTAGAT 
TTAGATAAGT TTGGCCCAAA GAAAGCACAA AATCTTTTAG ATGCCATAGA AAAAAGCAAA 
GATTGTACTT TAGAAGCATT TTTATACTCC TTAGGAATTC CTAATGTAGG AGTTAAAACT 
GCTAAGGATT TAGTAAAGAG ATTTGAGTCT TTAGAAAACC TAGAGAAGGC TACTTTTGAG 
GAATTAGTAT CTGTTCAAGA TGTTGGAGAT ATAGTTGCTA GAAGTATAAT AGAATTTTTT 
AAAGAGGAAA GAACTTTAAA AGTAATAAAT GAATTATTAT CCCTTGGAGT AAATCCTCAT 
TACGAGAAAA AAGAAGTTTT AGAAAGTCCA TTTATGGGAA AAACAGTAGT AGTAACTGGT 
ACTTTAGAAA ACTATTCTAG AACATCAATA AAAGAAAAAT TAGAATCTTT AGGAGCAAAG 
GTTTCAGGAA GTGTAAGTAA AAAGACTGAT TTTGTAATAG CGGGAGAAGC AGCAGGTTCA 
AAGTATGACA AAGCTAAATC TTTAGGTATT ACTATATTAA GTGAAGAAGA ATTTGAAAAT 
ATGATATAA 

 

Protein sequence

MDKKKLIEEL VEELNKYAYE YYVLGNSSVT DKDYDKKYYE LVDLEKETGY KLPYSPTQRV 
GDVILPEFKK YTHKARLWSL DKAQTLEEIR EWHNRNVKFL EEYNRTSDEE LPPLKYILTK 
KFDGLTINLS YDENGVLITG ATRGTGAIGE DVTAQVKTIK SIPLKIDCHD FLEIHGEAIM 
TTEAFEKYNS EADTPLKNLR NGAAGALRNL NVAETAKRNL SAFFYDVGYK EGAPFKTYME 
MLNFIKTKGF PMDDYIRECK TLDEIQKEID YIRDIRFDLN YDIDGLVIAI DDIRTRELLG 
YTVKFPKWAI AYKFEAQEAT TKLLDVEWNV GRSGRVSPTA ILEPVELAGV TVKRATLNNM 
DDIARKGVRL GAEVFVRRSN DVIPEIMGVV PESLEGTKEI EEPKVCPACG AHLVHEGVHI 
YCENTLGCKP QMVKTIVHFA GREAMNIAGF SERTAEQLFE KLDIRDISDL YKLEYEKLLD 
LDKFGPKKAQ NLLDAIEKSK DCTLEAFLYS LGIPNVGVKT AKDLVKRFES LENLEKATFE 
ELVSVQDVGD IVARSIIEFF KEERTLKVIN ELLSLGVNPH YEKKEVLESP FMGKTVVVTG 
TLENYSRTSI KEKLESLGAK VSGSVSKKTD FVIAGEAAGS KYDKAKSLGI TILSEEEFEN 
MI