| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2085 |
|---|
| Symbol | selA |
|---|
| ID | 4204683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2312634 |
|---|
| End bp | 2314022 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 642566635 |
|---|
| Product | selenocysteine synthase |
|---|
| Protein accession | YP_699394 |
|---|
| Protein GI | 110802296 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR00474] seryl-tRNA(sec) selenium transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAG AACTTCTTAG AGCTTTGCCT AAGATAGATG AAATACTTGG TATTTTTAAT
GAGGACTTTT TAAATGAAAA TGGGAGAGAA ACAGTTGTAA GTGCTTTAAG AGATATAATC
AATGAAAATA GGAAAGCTAT TCTAAATGAA GAGGTAGATT ATGCCTTAAC TAAGGAAGAA
GCTAAGAGTA AATGTGAGCA TAGATTACTT AAAAAAAGAG AAAGAAATTT AAAAAGGGTT
ATTAATGGAA CAGGTGTTGT TATTCATACT AATTTAGGAA GATCTTTGTT AAGCAAAGAG
GCCACTGAAG CAGTTGCTTT AGCCGCTTCA AGCTATAGCA ATCTAGAGTA TGATTTAAAA
AAGGGAGAAA GAGGATCTAG ATACTCCCTT ATAGAAGGTA TCATAAAAGA TATTACAGGA
GCTGAGGCAG CCTTAGTGGT AAATAATAAT GCAGCGGCCA TAATGCTTGT ATTAAATTCT
CTTTGTGAAA ATAAAGAGGT AATTGTTTCT AGAGGGGAAC TTGTAGAAAT AGGTGGCTCT
TTTAGAATTC CAGAAGTTAT GAATTTTTCA AGAGCTAAGC TTGTAGAAGT GGGAACAACT
AATAGAACAC ATTTATATGA TTATGAGGAT GCCATAACAG AAGAAACTGG AGCCTTTTTA
AAAGTTCATA GCTCAAACTT TAAAATAGTA GGTTTTACTA AGAGTGTAAG TGCTAATGAG
ATATGTAACT TAGCAAGGGA AAAGGATATA CCTGTAATAG AGGACATTGG AAGTGGTGTT
TTAATTGATT TAAGCAAATA TGGATTAGAA AAAGAGCCTA CAGTAATAGA AAGTTTAGAA
TCTGGAGTAG ATGTTGTAAC ATTTTCTGGA GATAAGATGC TTGGTGGAGC GCAGGCTGGG
ATTATTGTAG GTAAAAAGAA ATTCATAGAT AAAATAAAAA GGAATCAATT AACTAGAGCT
CTAAGAGTTG ATAAATTTAC TTTAGCTGCT TTAGAAATTA CTTTAAAACA TTATTTAAAT
GAAAAAGAGG CAATTGAAAA AATACCGACT CTTCATATGA TGACCTTAGA TTTAAAGGAA
ATAGAAGAAA GAGCTAATAG ACTTTATAAG AATTTAGAAG GGTTAAATAA GTTCTATAAA
TTTTCTATAG AAGAAGGTGA ATCAACAGTT GGTGGAGGTT CAATGCCAGA TAGTAAATTA
AGTACTTATT TACTTAGAAT AGATTCAGAT AGCATAAATG AAGTTAATTT AGAAAGAGAG
CTAAGAGAAT ATAAAATACC TATAATAACT AGAGTTTATA AAGGGGCAGT TTATATAGAT
CTTAGAACAA TCTTAGAAGA TGATTATGAA GTCATATTTA ATGCTTTAAA GGAAATAGGT
GAAAAATAG
|
|---|
| Protein sequence | MTKELLRALP KIDEILGIFN EDFLNENGRE TVVSALRDII NENRKAILNE EVDYALTKEE
AKSKCEHRLL KKRERNLKRV INGTGVVIHT NLGRSLLSKE ATEAVALAAS SYSNLEYDLK
KGERGSRYSL IEGIIKDITG AEAALVVNNN AAAIMLVLNS LCENKEVIVS RGELVEIGGS
FRIPEVMNFS RAKLVEVGTT NRTHLYDYED AITEETGAFL KVHSSNFKIV GFTKSVSANE
ICNLAREKDI PVIEDIGSGV LIDLSKYGLE KEPTVIESLE SGVDVVTFSG DKMLGGAQAG
IIVGKKKFID KIKRNQLTRA LRVDKFTLAA LEITLKHYLN EKEAIEKIPT LHMMTLDLKE
IEERANRLYK NLEGLNKFYK FSIEEGESTV GGGSMPDSKL STYLLRIDSD SINEVNLERE
LREYKIPIIT RVYKGAVYID LRTILEDDYE VIFNALKEIG EK
|
|---|
| |