| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2082 |
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| Symbol | rumA |
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| ID | 4205177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2308704 |
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| End bp | 2310062 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 642566632 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_699391 |
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| Protein GI | 110802049 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAAAAG GTAATGAAAT AGAATTATTA GTAGAGGGAA TAGAGTTCCC TGCTAAAGGA
TTCGGATTTG TAGATGGATT AAAAGTTTAT GCTAAAAATA CTTTTCCAGG ACAAAAAGTC
TTTGGTAGAG TAACTAAGAA AAGAAAAGAG TATGCAGAAA TTAGAGTTTC TGAAGTAAGA
GAAAAAGCTA GTTATGAGGA AGACCAAAAG TGTCCACACT TTGGAGTATG TGGAGGATGT
TCTTCCCAAA CAATTCCTTA TGAGAAACAA TTAGAGCTTA AGGTTGAACA AGTTAAAGAT
TTATTTAAAG AGGCTGAGGT TCCAACAGGA GAGTTTTTAG GTATAGAAAC TAGTCCAATT
CAATGGGAAT ATAGAAATAA GATGGAATAC ACTTTTGGAG ATGAAGAAAA AGGTGGAGAA
CTTACCCTTG GAATGCATAT GAAGGGAAAA TCTTTTGGAA TAGTAAATGT TGATAAATGT
GTATTAGTTG ATGAAGATTT TAGAAATATA CTAGATACAA CAGTTAAATA TTTCAGAGAA
AAAGGATTAC CTTTCTATAA AATAATGCCT AGAACAGGGT ATTTAAGATA CCTAGTAGTA
AGAAAAAGTG TTAAGACAGA AGAAATTCTT GTTAATTTAG TTACTACAAC TCAAATAGAT
TTTGATTTAA CAGAGTTTAC TGAGCTTATA AAAGGATTAA ACTTAAAAGG AAAATTAAAA
TCAATAATAC ATACAGAAAG TGATGCTTTA TCAGAGGCTG TTATACCAGA GAAAGTAAAC
ATTCTATATG GTGATGATTT TATAACAGAA AATCTTTTAG GATTAAACTT TAAAATATCT
CCATTCTCAT TCTTCCAAAC AAATTCACTA GGAGCTGAAA AGCTATATAG CATAGTGAGA
GATTTTATGG GAGCTGCTGA CAATAAGGTA GTATTTGATC TTTATTGCGG AACAGGAACA
ATAGGTCAAA TAGCCGCAGG AAAAGCTTCT AAGGTTATTG GAATTGAACT TATAGAAGAA
GCAGCTATGG CAGCTAATGA GAATGCTAAA TTAAATGGAT TAAATAATTG CAATTTTATA
GCTGGAGATG TAGCTGAGGT TATAAAAACA GTTAAGGATA AACCAGATAT AATAATTTTA
GATCCACCAA GAAGTGGGGT ACATCCAAAG GCATTAGACT ACGTTATAAA ATTTAATGCT
CCACAAATAA TCTATGTTTC ATGTAATCCA AAAACTCTAG TAACTGACTT AAAAGTTTTA
GAAGCTAAGG GATATGAAAT AGAAAAAACT TTACTTATGG ATATGTTCCC TAACACTCCT
CACGTAGAGA CAGTTGTAAA ATTAAATAAG ATTAAATAA
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| Protein sequence | MRKGNEIELL VEGIEFPAKG FGFVDGLKVY AKNTFPGQKV FGRVTKKRKE YAEIRVSEVR
EKASYEEDQK CPHFGVCGGC SSQTIPYEKQ LELKVEQVKD LFKEAEVPTG EFLGIETSPI
QWEYRNKMEY TFGDEEKGGE LTLGMHMKGK SFGIVNVDKC VLVDEDFRNI LDTTVKYFRE
KGLPFYKIMP RTGYLRYLVV RKSVKTEEIL VNLVTTTQID FDLTEFTELI KGLNLKGKLK
SIIHTESDAL SEAVIPEKVN ILYGDDFITE NLLGLNFKIS PFSFFQTNSL GAEKLYSIVR
DFMGAADNKV VFDLYCGTGT IGQIAAGKAS KVIGIELIEE AAMAANENAK LNGLNNCNFI
AGDVAEVIKT VKDKPDIIIL DPPRSGVHPK ALDYVIKFNA PQIIYVSCNP KTLVTDLKVL
EAKGYEIEKT LLMDMFPNTP HVETVVKLNK IK
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