| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2077 |
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| Symbol | |
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| ID | 4204453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2303574 |
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| End bp | 2304227 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 642566627 |
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| Product | vncR, response regulator |
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| Protein accession | YP_699386 |
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| Protein GI | 110801527 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00119329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATAT TAATTGTTGA AGATGATAAA ATAATAAGAG AAGGAATAAG TGAGTATCTA
TCAGAATTTG GTTATATTAT TATTGAGGCT AAAGACGGCA GAGAAGCTCT ATCTAAATTT
AATAATGATA TAAATTTGAT CATTTTAGAT ATTCAGATCC CTTATATAAA TGGGCTAGAT
GTGTTAAAAG AAATTAGGAA GAAAAGTAAG TTACCAATTT TAATATTAAC AGCATTTAGT
GATGAAGAAT ATAAGATTGA TGCATTCACT AATTTTGCAG ATGGCTATGT TGAAAAGCCT
TTTTCTTTAC CTGTATTAAA GGCTAGAATT GATTCTTTAA TTAAAAAGAA CTTTGGACAG
ATAGAGAAGT TCGAATATAA AAATATAGAT GTTAATTTTA ACAGTTACAC TGTAAAAATA
AATGGTGAGA ATATATATAT ATATGCAAAA GAGTTAGAAA TATTAAAATA CTTAGTAGAT
AATGAAGGAC AAGTATTAAC GAGAATGCAA ATAATTGATA ACGTTTGGAA GGAAACAGAA
GAAATTCCCT ATGATCGTGT GATAGATGTA TATATAAAAG AGCTAAGAAA AAAATTGAAA
TTAGATTGCA TTACTACCAT TAGGAATGTA GGATATAAAC TGGAGAGAAA ATGA
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| Protein sequence | MKILIVEDDK IIREGISEYL SEFGYIIIEA KDGREALSKF NNDINLIILD IQIPYINGLD
VLKEIRKKSK LPILILTAFS DEEYKIDAFT NFADGYVEKP FSLPVLKARI DSLIKKNFGQ
IEKFEYKNID VNFNSYTVKI NGENIYIYAK ELEILKYLVD NEGQVLTRMQ IIDNVWKETE
EIPYDRVIDV YIKELRKKLK LDCITTIRNV GYKLERK
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