Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_2024 |
Symbol | deoC |
ID | 4206061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 2230559 |
End bp | 2231233 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 642566574 |
Product | deoxyribose-phosphate aldolase |
Protein accession | YP_699333 |
Protein GI | 110803850 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0274] Deoxyribose-phosphate aldolase |
TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAAC AACAATTAGC AAAAATGATA GACCACACTA TATTAAAACC AGAAGCTGAT AAGGCATCAA TAGAAAAGCT TTGCAAAGAA GCTTTAGAAT ACAATTTTGC TTCAGTTTGC ATAAACCCTA CTAATGTAGA ATTAGCAGCT AAACTTTTAA AAGGCAGCGA AGTAAAGGTT TGTACAGTAA TAGGTTTCCC TTTAGGAGCA AACACTATGG AAGTTAAAGC TTTTGAAACT AAAGATGCAA TAGCAAAAGG TGCAGACGAA GTTGATATGG TTATAAACAT AGGAAGATTA AAAGATAAGG ATTATGAATA TGTAGAGAAA GATATAAAAG CTGTTGTAGA TGCGGCTGAT AAGAAAGCGG TTACAAAAGT TATAATAGAA ACTTGTCTTT TAACTGAAGA AGAAAAAGTT AAAGCTTGTG AATTAGCTAA AAAAGCAGGA GCAGATTTCG TTAAAACATC AACTGGATTC TCAACAGGTG GAGCAACTCC GGAAGATATT AAATTAATGA GAGAAACTGT AGGACCAGAT ATGGGAGTTA AAGCATCAGG TGGAGTAAGA TCAATAGAAG ATGCTGAAGC TGTAATCAAA AATGGTGCTA CTAGAATAGG AGCATCAGCT TCAATAGCTA TATGTGAAGG TAAAGTTTCA GATTCAACAT ATTAA
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Protein sequence | MDKQQLAKMI DHTILKPEAD KASIEKLCKE ALEYNFASVC INPTNVELAA KLLKGSEVKV CTVIGFPLGA NTMEVKAFET KDAIAKGADE VDMVINIGRL KDKDYEYVEK DIKAVVDAAD KKAVTKVIIE TCLLTEEEKV KACELAKKAG ADFVKTSTGF STGGATPEDI KLMRETVGPD MGVKASGGVR SIEDAEAVIK NGATRIGASA SIAICEGKVS DSTY
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