Gene CPR_1998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_1998 
Symbol 
ID4206484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp2204163 
End bp2204915 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content31% 
IMG OID642566548 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_699307 
Protein GI110803459 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAAGT TTTTTACACC AGCGCATATG TTTTCAGACA CTCATGCAAA AATAACAGGG 
GAAGATGTAA AACATATTTA TAAGGTTTTA AGGGTAAAAC CAGGTGAGAA GGTTGTTGTA
AATAACCTTG AAAGTGAAGA GTTTTTAGGT GAGGTAGAAG AGGTTAATAA ACAAGAGGTT
TCTATCAAAA TCTTAGAGAA GCTTGATGTA AACAATGAAA GTAATTTAAA TATTACTTTA
TTTCAAGGAA TGCCAAAGGC TGCAAAAATG GATTTAATAG TTCAAAAATG TGTAGAACTT
GGTGTTTTAG AAATAATTCC AACAATCACT GATAGAGTAG ACGTTAAATT AAAAGGTGAA
TTTAAAAAAT TAGATAGATT AAATAAAATC GCTTTAGAGG CATGTAAACA AAGTAAAAGA
ACAGTAATAC CAGAAGTATT AGAACCAATG GACTTTAAAG GGGTTTTAGA AAAGATAGAT
GAATTAGACC TTATGGTTAT TCCTTATGAA AATGCTACAG GATACGGAAT AAGAGCTATG
GTTAACTCTA TAGAGAATAA AGATAGTATA AAAAATGTTG GAATAATGGT TGGGCCAGAA
GGCGGATTTG AAGAAAGTGA AATAGAAGCC CTAAAAGAAA AAGGAGCTCA TATTGTAACT
TTAGGACCAA GAATTTTAAG AACAGAGACA GCAGGATTTA CCTGCATTTC TCTTATTCAG
TATGAGCTTG GTGATTTAGG AGGAAATATT TAA
 
Protein sequence
MHKFFTPAHM FSDTHAKITG EDVKHIYKVL RVKPGEKVVV NNLESEEFLG EVEEVNKQEV 
SIKILEKLDV NNESNLNITL FQGMPKAAKM DLIVQKCVEL GVLEIIPTIT DRVDVKLKGE
FKKLDRLNKI ALEACKQSKR TVIPEVLEPM DFKGVLEKID ELDLMVIPYE NATGYGIRAM
VNSIENKDSI KNVGIMVGPE GGFEESEIEA LKEKGAHIVT LGPRILRTET AGFTCISLIQ
YELGDLGGNI