Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1998 |
Symbol | |
ID | 4206484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 2204163 |
End bp | 2204915 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 642566548 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_699307 |
Protein GI | 110803459 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATAAGT TTTTTACACC AGCGCATATG TTTTCAGACA CTCATGCAAA AATAACAGGG GAAGATGTAA AACATATTTA TAAGGTTTTA AGGGTAAAAC CAGGTGAGAA GGTTGTTGTA AATAACCTTG AAAGTGAAGA GTTTTTAGGT GAGGTAGAAG AGGTTAATAA ACAAGAGGTT TCTATCAAAA TCTTAGAGAA GCTTGATGTA AACAATGAAA GTAATTTAAA TATTACTTTA TTTCAAGGAA TGCCAAAGGC TGCAAAAATG GATTTAATAG TTCAAAAATG TGTAGAACTT GGTGTTTTAG AAATAATTCC AACAATCACT GATAGAGTAG ACGTTAAATT AAAAGGTGAA TTTAAAAAAT TAGATAGATT AAATAAAATC GCTTTAGAGG CATGTAAACA AAGTAAAAGA ACAGTAATAC CAGAAGTATT AGAACCAATG GACTTTAAAG GGGTTTTAGA AAAGATAGAT GAATTAGACC TTATGGTTAT TCCTTATGAA AATGCTACAG GATACGGAAT AAGAGCTATG GTTAACTCTA TAGAGAATAA AGATAGTATA AAAAATGTTG GAATAATGGT TGGGCCAGAA GGCGGATTTG AAGAAAGTGA AATAGAAGCC CTAAAAGAAA AAGGAGCTCA TATTGTAACT TTAGGACCAA GAATTTTAAG AACAGAGACA GCAGGATTTA CCTGCATTTC TCTTATTCAG TATGAGCTTG GTGATTTAGG AGGAAATATT TAA
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Protein sequence | MHKFFTPAHM FSDTHAKITG EDVKHIYKVL RVKPGEKVVV NNLESEEFLG EVEEVNKQEV SIKILEKLDV NNESNLNITL FQGMPKAAKM DLIVQKCVEL GVLEIIPTIT DRVDVKLKGE FKKLDRLNKI ALEACKQSKR TVIPEVLEPM DFKGVLEKID ELDLMVIPYE NATGYGIRAM VNSIENKDSI KNVGIMVGPE GGFEESEIEA LKEKGAHIVT LGPRILRTET AGFTCISLIQ YELGDLGGNI
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