| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1975 |
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| Symbol | rpoD |
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| ID | 4204171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2181235 |
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| End bp | 2182335 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 642566525 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_699284 |
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| Protein GI | 110803528 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000064083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGCTA AAACAACAAA AGCAAAAAAA GGTGAAGGTA AAGAAAAAGT TGACAAAATG
GTCTTAGTAA AAAGACTTAT AGATAAAGGT AAAAAAAGCG GTTCATTGAC TTACAAGGAG
ATAATGGATG AGCTTGATGA AATAGAATTA AATCCAGAAC AAATAGAGAA AATCTATGAG
GTTCTAGAAT CAATGGGTAT AGAGGTCATA AGTGAAATCG AGCAAGAAGA GGAAGAGGAG
GAAGAATTAG ATCTTTCTGT TCCAGAAGGT ATTGCTATTG ATGACCCTGT AAGAATGTAC
TTAAAAGAAA TAGGTAAAGT TCCACTATTA TCATCAGAGG ATGAAATAGA GCTTGCTAAA
AAAATAGAAG AAGGAAGCAA CTATGCTAAG AAAAAATTAG CAGAGGCTAA CTTAAGACTT
GTTGTAAGTA TAGCTAAAAG ATATGTTGGT AGAGGAATGT TATTCCTAGA TCTTATACAA
GAAGGTAATT TAGGTCTTAT AAAGGCTGTT GAAAAATTTG ATTACAGAAA AGGGTATAAG
TTCTCAACAT ATGCTACATG GTGGATAAGA CAGGCAATAA CTAGAGCTAT TGCTGACCAA
GCAAGAACTA TAAGAATACC AGTTCATATG GTAGAAACTA TAAATAAGCT TATAAGAATA
CAAAGACAAT TAGTTCAAGA GTTAGGAAGA GATCCATTAC CAGAGGAATT ATCAAAACAA
ATGGATATGC CAGTAGATAA GGTAAGAGAA ATCTTAAAAA TAGCTCAAGA ACCAGTTTCA
TTAGAAACTC CAATTGGTGA AGAGGAAGAT TCACATTTAG GTGACTTTAT ACCAGATGAT
GATGCTCCAG CACCAGCAGA GGCAGCAGCA TTTACAATGT TAAAAGAACA ATTAATAAAT
GTTTTAGATA CTTTAACTCC TAGAGAGGAA AAAGTATTAA GATTAAGATT TGGATTAGAT
GATGGAAGAG CTAGAACTCT TGAAGAAGTT GGTAAAGAAT TCAACGTAAC TAGAGAGAGA
ATTAGACAGA TTGAAGCAAA AGCTTTAAGA AAATTAAGAC ATCCAAGTAG AAGTAAAAAG
TTAAAAGATT ATTTAGATTA G
|
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| Protein sequence | MKAKTTKAKK GEGKEKVDKM VLVKRLIDKG KKSGSLTYKE IMDELDEIEL NPEQIEKIYE
VLESMGIEVI SEIEQEEEEE EELDLSVPEG IAIDDPVRMY LKEIGKVPLL SSEDEIELAK
KIEEGSNYAK KKLAEANLRL VVSIAKRYVG RGMLFLDLIQ EGNLGLIKAV EKFDYRKGYK
FSTYATWWIR QAITRAIADQ ARTIRIPVHM VETINKLIRI QRQLVQELGR DPLPEELSKQ
MDMPVDKVRE ILKIAQEPVS LETPIGEEED SHLGDFIPDD DAPAPAEAAA FTMLKEQLIN
VLDTLTPREE KVLRLRFGLD DGRARTLEEV GKEFNVTRER IRQIEAKALR KLRHPSRSKK
LKDYLD
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