| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1962 |
|---|
| Symbol | polA |
|---|
| ID | 4205375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2166242 |
|---|
| End bp | 2168842 |
|---|
| Gene Length | 2601 bp |
|---|
| Protein Length | 866 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642566512 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_699271 |
|---|
| Protein GI | 110802827 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAT TATTGATATT AGACGGGAAC AGTCTTTTAA ATAGAGCCTT TTATGCTGTG
CCTTTGCTTA GCAATAGTGA AGGAACTCAT ACAAATGCTA TTTATGGTTT TACAAATATG
CTTTTTAAGA TGAGAGAGGA TATAAAACCT GATTATATAG TTTGTACTTT TGATAAAAAA
GCACCAACTT TTAGACATTT AGAGTATGGG GATTATAAGG CTGGAAGAAA GAAAATGCCT
CCTGAGTTAG CAGAGCAGTT TCCTATTGTT AAGGAAATGC TAAAGTTATT TTCAATAACA
ACTTACGAAT TAGATGGATT CGAAGCAGAT GATATTATAG GAAGTTTAGC TAAGGTGGCT
GAAGGTGAAG GAATCGAAGT TTATATTATT ACTGGAGATA AGGATGCTCT TCAACTAGCA
GCTAAGGATA TAAACGTATG TATAACTAAG AAGGGTGTTT CTGAAATAGA AGTTTATAAC
TATGATAGAA TGGTTGAAGA ATATGGAGTT ACTCCTACTC AGTTCATAGA TGTTAAAGGA
CTTATGGGAG ATAAATCTGA TAATATTCCA GGGGTACCAG GAGTAGGAGA AAAAACAGCC
TTTAAATTAA TAAAAGAGTA TGGTTCAGTA GAGGCAGTTT TAGAAAATAT AGATAACATA
AGTGGTAAAA AGTTAAAAGA AAATTTAACT GAGTACAGCG AACAGGCTAT ATTCTCTAAA
AAGTTAGCTA CTATTATGAC TAATGTTCCT ATAGATTTTG ATTTAGATGA GATTAAATCA
AAGGATGATT ATAATAAAGA TCAGTTAAAA GCTTTATTTA CAAAGCTTCA AATGAAATCT
ATATTAGATA AATTATCAAA TGGGGAAGAA GAAGAGCCAG AAATAGAAGT TAAAATAACT
AATATAGAAA ATAATAAAAA ATTAGAAGAT TTATTTAATA ATATAAACGA AGAAGTATAT
ATTAATTTTA CTTATTTAAA TAAAGAAAAG TATTCTACTA TAGAGATTGA TAAAATATTT
ATTAATTATG ATGAGAAAAA TTATTTAATT AACTTTAAAG AGTTAGCACA AGAAGAGGAG
AATATTAAAG CCCTTAAAGA ATTTTTTGAG AATGAAGATA TATTAAAAAA TGGCTATAGT
ATAAAAAATG CCTTAACAGC ATTAAAAAAA TTAGGGATAG AATTTAAGGG ATTAGCCTTT
GATTGTGAAT TAGCAGCATA TTTAATAGAT TCATCTAAGG GAGAATATAC TCTTTTATCC
TTAATAAATA ACTATCTTTC AAAATTCCCT AATGTAAAAG ATGGAGAGGA AGACTTAGTT
GGAATTTCAT TTATGAAAGA GTTGACTTTA GTTCTAAAGA AAAAGATAGA AGAAGAGAAA
ATGGAAAGAC TTATGTATGA TATTGAGCTT CCTTTAGAAA CAGTTTTATC TTCTATGGAA
TCAATAGGAT TTAAAGTAAA TAAAGATATT TTAGATGAGT TATCTATTAA GTTTAAAAGA
GAGTTAGAGG AAACACAAAA AGAGATCTTT GAACTTGCAG ATGAAGAGTT TAATATAAAT
TCTCCAAAAC AATTAGGTAA GATATTATTT GAAAAATTAG ATTTACCAGT TATAAAGAAA
ACTAAAACTG GATATTCAAC TAACGCAGAA GTATTAGAAA AGCTTAAGGA CAAACATCCT
ATAATAGAAA AAATAACATA TTTTAGACAG CTTTCAAAAA TATATTCAAC TTATGTTGAA
GGATTAAAGT CTGTTATAGA TACAGATGGT TCTATACATT CAACATTTAA TCAAACTGTA
ACTACTACAG GTAGACTTTC ATCAACAGAG CCTAATCTTC AAAATATACC TATAAAATAT
GAAATGGGTA GAGAAATAAG AAAGGTATTT ATACCAAAAG AAGAAGGAGA TTTATTAATA
TCAGCTGACT ACTCACAAAT AGAACTTAGA GTTTTAGCTC ATATTTCTGG TGATGAAAAT
ATGATAGATG CATTTAATCA TCATTCAGAT ATACACACTA AGACTGCTTC TGAAGTGTTT
AAAGTACCAG TTGAAGAGGT AACTCCATTA ATGAGAAGTA GGGCTAAGGC AGTAAACTTT
GGTATAGTAT ATGGAATCGG AGATTTTAGT CTTTCACAGG ATTTAAATAT TTCAAGAAAA
GAAGCTAAAG AATATATGGA TATATATTTT GAAAGATATC CAAAAATTAA AGAGTATATT
TCTAAGGTTA TTCATGAAGC TCAAACAAAG GGATATGTAT TAACTATGTT AAATAGAAGA
AGATATATAC CTGAAGCAAA TGCTTCAAAT AAAATAGTAA AAGCCCTAGG AGAAAGACTT
GCAATGAATG CTCCAATACA AGGAACAGCA GCAGATATAA TAAAGCTTGC TATGGTAAAT
GTATATAACA AGTTAAAAGA ATTAAATTTA AATAGTAAGT TAATATTACA AGTTCATGAT
GAACTTATAA TAAATGTTGT CAAAGGAGAA TTAGACATTG TTAAGAAACT TCTAAAAGAG
GAAATGGAAA ATACAATTAA ATTAAGTGTA CCATTAGATG TTGATGTTAA TGTTGGAGAA
GATTGGTATA AGTTAAAATA A
|
|---|
| Protein sequence | MKRLLILDGN SLLNRAFYAV PLLSNSEGTH TNAIYGFTNM LFKMREDIKP DYIVCTFDKK
APTFRHLEYG DYKAGRKKMP PELAEQFPIV KEMLKLFSIT TYELDGFEAD DIIGSLAKVA
EGEGIEVYII TGDKDALQLA AKDINVCITK KGVSEIEVYN YDRMVEEYGV TPTQFIDVKG
LMGDKSDNIP GVPGVGEKTA FKLIKEYGSV EAVLENIDNI SGKKLKENLT EYSEQAIFSK
KLATIMTNVP IDFDLDEIKS KDDYNKDQLK ALFTKLQMKS ILDKLSNGEE EEPEIEVKIT
NIENNKKLED LFNNINEEVY INFTYLNKEK YSTIEIDKIF INYDEKNYLI NFKELAQEEE
NIKALKEFFE NEDILKNGYS IKNALTALKK LGIEFKGLAF DCELAAYLID SSKGEYTLLS
LINNYLSKFP NVKDGEEDLV GISFMKELTL VLKKKIEEEK MERLMYDIEL PLETVLSSME
SIGFKVNKDI LDELSIKFKR ELEETQKEIF ELADEEFNIN SPKQLGKILF EKLDLPVIKK
TKTGYSTNAE VLEKLKDKHP IIEKITYFRQ LSKIYSTYVE GLKSVIDTDG SIHSTFNQTV
TTTGRLSSTE PNLQNIPIKY EMGREIRKVF IPKEEGDLLI SADYSQIELR VLAHISGDEN
MIDAFNHHSD IHTKTASEVF KVPVEEVTPL MRSRAKAVNF GIVYGIGDFS LSQDLNISRK
EAKEYMDIYF ERYPKIKEYI SKVIHEAQTK GYVLTMLNRR RYIPEANASN KIVKALGERL
AMNAPIQGTA ADIIKLAMVN VYNKLKELNL NSKLILQVHD ELIINVVKGE LDIVKKLLKE
EMENTIKLSV PLDVDVNVGE DWYKLK
|
|---|
| |