Gene CPR_1954 details

Gene Information

• Locus tag: CPR_1954
• ID: 4204118
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2158913
• End bp: 2160787
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 19%
• IMG OID: 642566504
• Product: sensor histidine kinase
• Protein accession: YP_699264
• Protein GI: 110801543
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000131402
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATTTAA AACTTAGTAA AGTTAAAAAT TTAATTAATA TTATTTTAGT TATAGCAACT 
ATTTTGTATA TTGTATATTT TTTTAGACCA CTTACAGCAT TTTATTTACC AATAATAATT 
GAAACTATAT TGGTGTTTAG TATAACATTT ATTGCTACAA CTGTATTTAA ATTTTCTAAT 
AAAAAAATTT TTAAATTAAT AAGTATGTAT TTGCTGTTAA TTGCTATATT AAAATTTATA 
TCACTTGTTT ATTTAATGTT TTTCTTTGGT GAAAAAGAAA TAATTCAGTG TTTAAATTTA 
AAAATATTAG CTATTTGTAA TGTTTTAGAA AGTATTTATT GCTTCATGAT AATAGTATAT 
GTAAAATATG TAAATTTAAA TATGAAATTA ATAGTTGTTT TTTTTACTAT AATATCCTTA 
GTTAGTATAT GTTTATTTGA TGTAATTGTG TTTGGGGTGA TATCTACAGT ACTTCTTTTG 
CTTATATTAT ATCTTTTAAA AGATTTTAAG ATTTTTAAGA ATAATCTATT AAATTACTTA 
AAGTTATTCA TTATAATAAA TCTATCTTTA GTATTAATAT ATGCTCTAGT ATATATTTTT 
AATTTAGAAG CTTTGCTATT GTTAATATAT ATATTAAAAA TATTAATATA TCTTATAATA 
TACGTTTGGA TTTCTGAAAT GCTTATTACA AAACCATATA AAATTTTACA TCAAGATATA 
ATTGATAAAA ATAAAAAACT TAAAATATTA AATAAAAAAA TGGAAGAGAG TAATAATGAA 
TTTAAAGAAT TCAAGGAAAA GTTAAAAGAT AATGAAACTT ATTTTAAAAA TTTTATAAAC 
AACGCTCCTA TGTCCATAGT AATATTAAAT AATCATAATT ATAGAATATT TTCCATAAAT 
AAACAATTTT CAAATGAATT AAATTTAAAA AATAATAGAC AAGTAATAAA TAGAAATTTA 
TTTAAAATAA TAAATATTGA AAATAAAGAC GAGTTTTTAA TAACAAAAAA AGGAGAAGCT 
TCATATTCTT CAGGTAAAAT TGATATTTTT TGGCAATTAA ATATTTTATT ACAAACAAAA 
GATTATTTAA TAATTTCAAT GAAAAATATA ACAGAATTTA AATTTTCAGA AAAGATAAAA 
TTTGATTTAG GAAAAAGAAA ATTATCAGAA AAAATAAAAA ATGATTTTTT ATCAAGCATA 
TCTCATGACT TAAAGACACC TATAAATGTC ATATATTCAT CAGTACAAGT TCAGGAGAAG 
TTTTATGTTG ATGAAAACAT AAATAAAATA GGTCATTATA ATCAAGTTAA TAAGGAAAAT 
TGTATTACAT TAATGAGATT AGCTAATAAT CTGATAGATT CATCAAAAAT TGATTATGAT 
TATCTAAAGC CAAATTTTAA AGTTTATAAC ATAGTAACTT TAGTAGAAGA TTCTATATTA 
AATTTAGCTG AGTATATAAA AGAAAAAAAA TTGACTTATA TATTTGATAC AGATGAAGAA 
GAGTTATATG TTAAATGCGA TCAAGAATTC ATTCAAAGAA TTATTTTAAA TTTAATTTCT 
AATTCAATAA AATATACCAA AAGAGGTGGA ATAAGAGTAC AAATAAAATC GAATAGAAAC 
AAGGTTATTA TTGATTTTAC AGATACTGGA GAAGGTATGG ATAAAGATTT TATAGAAAAA 
GCTTTTTTAA GATATAGTAA AGGAAATAAA AAAGGAATAA AAAATAAAAG TACAGGAATT 
GGATTATATA TTGTTAAGAG TTTAGTTGAA CTACAAAATG GAACTATATA TATAAATTCT 
ATTAAGGATG CAGGAACTAA TGTTAGATTA GAGTTTAGTA GGGAGAAAAA TTGTGGAATA 
CAAAGTGGAA TATGA 

 

Protein sequence

MYLKLSKVKN LINIILVIAT ILYIVYFFRP LTAFYLPIII ETILVFSITF IATTVFKFSN 
KKIFKLISMY LLLIAILKFI SLVYLMFFFG EKEIIQCLNL KILAICNVLE SIYCFMIIVY 
VKYVNLNMKL IVVFFTIISL VSICLFDVIV FGVISTVLLL LILYLLKDFK IFKNNLLNYL 
KLFIIINLSL VLIYALVYIF NLEALLLLIY ILKILIYLII YVWISEMLIT KPYKILHQDI 
IDKNKKLKIL NKKMEESNNE FKEFKEKLKD NETYFKNFIN NAPMSIVILN NHNYRIFSIN 
KQFSNELNLK NNRQVINRNL FKIINIENKD EFLITKKGEA SYSSGKIDIF WQLNILLQTK 
DYLIISMKNI TEFKFSEKIK FDLGKRKLSE KIKNDFLSSI SHDLKTPINV IYSSVQVQEK 
FYVDENINKI GHYNQVNKEN CITLMRLANN LIDSSKIDYD YLKPNFKVYN IVTLVEDSIL 
NLAEYIKEKK LTYIFDTDEE ELYVKCDQEF IQRIILNLIS NSIKYTKRGG IRVQIKSNRN 
KVIIDFTDTG EGMDKDFIEK AFLRYSKGNK KGIKNKSTGI GLYIVKSLVE LQNGTIYINS 
IKDAGTNVRL EFSREKNCGI QSGI