| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1907 |
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| Symbol | secF |
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| ID | 4206614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2106077 |
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| End bp | 2106946 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642566457 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_699217 |
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| Protein GI | 110801882 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0418717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTTAAAA TTGTAGAGAA GAAGAAAATA TGGTTTACTA TATCAATTCT TATAATTGTT
ATAGGTTTTG GATTTATGTT TACTAAAGGT ATGAACTTTG GAATCGACTT TAGAGGGGGT
ACTCAGGTTG TAATAAACAT GGGTACAGAT TTTAATAAAA CTGATGTTGA TAAAATTGTA
GAAGAATATT CAAAGGATGC CGTTACAAAT CAAGTTAATG GTACTGAACT TCAAATAAAA
GCAAAAGAGT TAAATAGTTC TCAAGTTAAT GATATCTTTA AGGCTCTTAA AGAAAAATAC
GATTTAAAAG ATGATGCCTT AGTATCACAA AATGAAATTG GGGCTTCAGT TGGAAGAGAT
TTAACAACAA ATGCCATAGT AGCTCTTGCG ATAGCAGTAA TAGGTATGCT TATATACGTA
ATTATAAGAT TTGAATTTTC TTTTGGTATT GCAGCTATAA TAGCTCTATT ACACGATGTA
TTAATAACTA TAAGTGTTTA CGCTATATTT GGAATAACAA TAAATACTCC ATTTATAGCG
GCTATACTTA CAATAGTAGG TTATTCTATA AATGATACAA TAGTTATATT TGATAGAATA
AGAGAAAATA GAAAAAAACT TAGAGGGAAA TCTGTGGAAG AAATTGCAGA CATGAGTATT
ACTCAAACAA TGTCAAGATC TATAAATACA ACACTTACAA CTTTAATCAC TATAGTTTGT
GTTTATATAT TTGTTCCTAC AGTTAGAGAT TTTGCTTTCC CATTAATAGT TGGTATAGCA
TCAGGAGCTT GTTCTTCAAT ATTTATAGCA AGTCCAATTT GGTGTATTTT AGCTAACAGA
CAAAAAAATA AAAAGGCAAT AAATAAGTAA
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| Protein sequence | MLKIVEKKKI WFTISILIIV IGFGFMFTKG MNFGIDFRGG TQVVINMGTD FNKTDVDKIV
EEYSKDAVTN QVNGTELQIK AKELNSSQVN DIFKALKEKY DLKDDALVSQ NEIGASVGRD
LTTNAIVALA IAVIGMLIYV IIRFEFSFGI AAIIALLHDV LITISVYAIF GITINTPFIA
AILTIVGYSI NDTIVIFDRI RENRKKLRGK SVEEIADMSI TQTMSRSINT TLTTLITIVC
VYIFVPTVRD FAFPLIVGIA SGACSSIFIA SPIWCILANR QKNKKAINK
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