Gene CPR_1882 details

Gene Information

• Locus tag: CPR_1882
• Symbol: hlyIII
• ID: 4204291
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2076711
• End bp: 2077361
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 26%
• IMG OID: 642566432
• Product: hemolysin III
• Protein accession: YP_699192
• Protein GI: 110802509
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAATTG TGAGTGAAGA ATTAAATTTT TATACTAAAG GAGAAGAAAT TGCTAATGCA 
ATAACTCATG GAATTGGAGT AGTATTAGCT ATAGCAGGAG CTGTTTTACT TATAGTTTTC 
TCATCTTTAA GTGGAGATAT TTATAAGATA GTAAGTTTCA CTATTTTTGG AATAACTCTA 
TTTTTACTCT ATTTAGGATC AACATTATAT CATAGTATTC CAAATAAAAA AGTAAAGAGG 
TTTTTAAGAA TAATTGACCA TTCATCAATT TATCTTTTAA TAGCAGGAAC ATATACACCT 
TATGTATTAG TATGTTTAAG GGATAATAAA AAAGCTATGG TTATATTTAT TATGATTTGG 
GTAATGACCA TATTAGGAAT AGTATTTAAA TTTATCTGTA TAAATAAGTT TGAGAATCTA 
TCAACCTTAT TATATATATT TATGGGGTGG GCAGTTATCT TTGTAGTCAA AGATGTATGG 
CAAAGAGTAC CTCATATGTC TGTACTTTGG CTTATTATAG GTGGATTATT TTATACATTA 
GGATGTATAT TTTTTGTTTT AGATAGAATG CCATACAATC ATGCTATCTG GCATTTATTT 
GTAATAGGAG GAAGTATAAG CCACTTTTTT TCTATAATAT TATATTTATA A 

 

Protein sequence

MVIVSEELNF YTKGEEIANA ITHGIGVVLA IAGAVLLIVF SSLSGDIYKI VSFTIFGITL 
FLLYLGSTLY HSIPNKKVKR FLRIIDHSSI YLLIAGTYTP YVLVCLRDNK KAMVIFIMIW 
VMTILGIVFK FICINKFENL STLLYIFMGW AVIFVVKDVW QRVPHMSVLW LIIGGLFYTL 
GCIFFVLDRM PYNHAIWHLF VIGGSISHFF SIILYL