| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1878 |
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| Symbol | |
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| ID | 4205482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2072556 |
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| End bp | 2073341 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 25% |
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| IMG OID | 642566428 |
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| Product | polysaccharide deacetylase family protein |
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| Protein accession | YP_699188 |
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| Protein GI | 110802197 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | [TIGR02764] polysaccharide deacetylase family sporulation protein PdaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000117322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAATACTT TGAAAAAAAA TAATAATTTT TTTATTTTTA AAAACTTTTT TAATACCATT
ATTTTAGTTG TTATTATTGC CATATTTACA TTGCCTATTA ATGTTTTTGC AAAAGATAAT
AAGCCAATTC ATTGTGTGGA TAGAGATGAT AAAAAAATTT CTCTGACCTT TGATGTGAAT
TGGGCAGAAA ATGATTATTT ATATGAAATT TTAGATTTAC TAGATAAAAA TAATGTAAAA
GCTACATTTT TTATAATGGG TAAGTGGGTA ATATATCCTG AAGGCAATAG AGAAAAGTTA
ATAGAGATTC ATAAGAGAGG ACATGAAATA GGAAATCATA GTTATGTACA TCCTGATTTT
AAGAATATAG GAAAAGAGAG AATAATTGAA GAGGTTAAAA AAACAGAAGA AATAATAGAA
AAGGAAGTTG GAGTAAAGAC TAATTTATTT CGATTTCCTA GTGGTTCATA TAGCCAAGAA
AGTTTAAGTG TTATTCATGG ATTACAATAT AAAAGTATAC AATGGGATGT TGATAGTGTG
GATTGGAAAG GAGAGAGTAA AGAGAGGGAA TATAAAAAGG TAATTGATAA TATAAAAGGT
GGATCAATAC TTTTATATCA TAATAATGGT AAACATACTG TAGAAAATCT TAATGAGATA
ATTCCAAAAT TAAAATCAGA AGGATATGAA TTTGTTAAAA TAAGTGACAT AATATATGAA
AATAGTTACG AAATAGATGA CAATGGAAAA CAATTGTTAA TCAAAACGAA ACAAAATAAT
AGTTGA
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| Protein sequence | MNTLKKNNNF FIFKNFFNTI ILVVIIAIFT LPINVFAKDN KPIHCVDRDD KKISLTFDVN
WAENDYLYEI LDLLDKNNVK ATFFIMGKWV IYPEGNREKL IEIHKRGHEI GNHSYVHPDF
KNIGKERIIE EVKKTEEIIE KEVGVKTNLF RFPSGSYSQE SLSVIHGLQY KSIQWDVDSV
DWKGESKERE YKKVIDNIKG GSILLYHNNG KHTVENLNEI IPKLKSEGYE FVKISDIIYE
NSYEIDDNGK QLLIKTKQNN S
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