| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1776 |
|---|
| Symbol | pdp |
|---|
| ID | 4204660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1975353 |
|---|
| End bp | 1976654 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642566326 |
|---|
| Product | pyrimidine-nucleoside phosphorylase |
|---|
| Protein accession | YP_699091 |
|---|
| Protein GI | 110802351 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0213] Thymidine phosphorylase |
|---|
| TIGRFAM ID | [TIGR02644] pyrimidine-nucleoside phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATGT ATGATTTAAT ATTAAAAAAG AGAAATGGTG GGGAATTAAG CACTGAAGAA
ATAAACTTTT TTGTTGATAA ATATACAAAT GGTGAAATAC CTGATTATCA AGTAGCAGCC
TTATTAATGG CTATATATTT CCAAAAAATG AATAAGAGAG AAACTTCGGA TTTAACTATG
GCTATGGTTA ATTCAGGAGA TATATTAGAT TTAAGTGAAA TACACGGTAT AAAAGTAGAC
AAGCATTCAA CTGGTGGGGT TGGTGATACT ACTACTTTAG TTTTGGGACC TATGGTTTCA
GCTTTAGGAA TTCCTGTAGC TAAAATGTCA GGAAGAGGTC TTGGACATAC TGGTGGAACA
ATAGATAAAT TAGAAAGTTT TGATGGATTC TCAGTAGAAA TGACTAAGGA TCAATTTATA
AATAATGTCA ATAATATAAA ATTAGCAGTT GGTGGACAAA CAGGAGATTT AGCTCCAGCT
GATAAAAAAC TTTATGCTTT AAGAGATGTT ACTGGAACTG TTGATAATGT ATCATTAATA
GCTTCAAGTA TTATGAGTAA AAAAATTGCT GCAGGCGCTG ACGCCATAGT ATTAGACGTT
AAGGTTGGAG ATGGAGCATT TATGAAAACT CCAGAGGCAG CTAGAGAACT TGCAACTGAA
ATGGTTGGAA TAGGTAAACA TGTTGGAAGA AATACTGTTG CCATAATTTC AGATATGGAT
CAACCTTTAG GATTTGCTAT AGGTAATGCT TTAGAAGTTA AAGAAGCCAT AGAAACTTTA
AGAGGAAATG GTCCTAAGGA TCTTTTAGAG CTTTGTTTAA CACTTGGAAG CAACATGGTT
GTCTTAGCAG GTGCTGCTAA AGATACTGAT GAAGCAAGAA AAATGTTAAT GGAAACAATA
ACTTCAGGAA AAGCAATTGA AAAATTAAAA GAATTTGTAA AGGCTCAAGG TGGAGATGCA
TCAGTTATTG ATAATATATC AAATTTCCAT AATGCTAAAT ATGTAATTCC AGTTAAAGCT
AATAAATCAG GGGTTGTAAG TAAAATACAT GCTGAAAACA TAGGATTAGT TGCTATGGAA
CTTGGAGCAG GAAGAGCTAC TAAAGAAAGT ATTATAGATT TAGCTGTTGG TATTGTTCTT
CAAAAGAAAA GAGGAGACAA AGTTAATGAC GGAGATATAA TAGCATATAT TCATGCTAAT
GATGAAGAAA AAGGTAATAA AGCAATAGAT GGAATATTAG CTAATTACGA AATATCAGAT
TCAGTAAAAG ATATTCCATT AATATATGAT ATAGTTAAAT AG
|
|---|
| Protein sequence | MRMYDLILKK RNGGELSTEE INFFVDKYTN GEIPDYQVAA LLMAIYFQKM NKRETSDLTM
AMVNSGDILD LSEIHGIKVD KHSTGGVGDT TTLVLGPMVS ALGIPVAKMS GRGLGHTGGT
IDKLESFDGF SVEMTKDQFI NNVNNIKLAV GGQTGDLAPA DKKLYALRDV TGTVDNVSLI
ASSIMSKKIA AGADAIVLDV KVGDGAFMKT PEAARELATE MVGIGKHVGR NTVAIISDMD
QPLGFAIGNA LEVKEAIETL RGNGPKDLLE LCLTLGSNMV VLAGAAKDTD EARKMLMETI
TSGKAIEKLK EFVKAQGGDA SVIDNISNFH NAKYVIPVKA NKSGVVSKIH AENIGLVAME
LGAGRATKES IIDLAVGIVL QKKRGDKVND GDIIAYIHAN DEEKGNKAID GILANYEISD
SVKDIPLIYD IVK
|
|---|
| |