Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1754 |
Symbol | nifU |
ID | 4205671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1953121 |
End bp | 1953555 |
Gene Length | 435 bp |
Protein Length | 144 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 642566304 |
Product | nifU protein |
Protein accession | YP_699069 |
Protein GI | 110802618 |
COG category | [C] Energy production and conversion |
COG ID | [COG0822] NifU homolog involved in Fe-S cluster formation |
TIGRFAM ID | [TIGR01994] SUF system FeS assembly protein, NifU family [TIGR01999] FeS cluster assembly scaffold IscU [TIGR03419] FeS cluster assembly scaffold protein NifU, Clostridium type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00241183 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATATATA GTGAAAAAGT TATGGATCAT TTCAAAAACC CAAGAAATGT AGGAGAAATT AAAGATGCTA ACGGAATCGG AGAAGTTGGT AACGCTAAAT GTGGAGATAT AATGAGAATA TATCTTAAAA TAGAAAATAA CATTGTAGAA GATGTTAAAT TTGAAACTTA TGGATGTGGA TCTGCTATAG CTTCATCAAG CATGGCTACA GAGCTTATAA AAGGAAAAAC TGTAGAAGAA GCTTGGGAAT TATCAAACAA AGCTGTTGCA GAAGCTTTAG ATGGTCTTCC ACCAGTAAAA ATGCACTGTT CAGTATTAGC TGAGGAAGCT ATACACAAAG CTATAAATGA CTATAGACAA AGACAAGGAT TAGAGCCTTG GGATATGAAA GAACATTCAC ATGACATACA TGAGCATGTT CACGGTCAAG AATAA
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Protein sequence | MIYSEKVMDH FKNPRNVGEI KDANGIGEVG NAKCGDIMRI YLKIENNIVE DVKFETYGCG SAIASSSMAT ELIKGKTVEE AWELSNKAVA EALDGLPPVK MHCSVLAEEA IHKAINDYRQ RQGLEPWDMK EHSHDIHEHV HGQE
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