Gene CPR_1744 details

Gene Information

• Locus tag: CPR_1744
• Symbol: typA
• ID: 4206595
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 1941642
• End bp: 1943474
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 642566294
• Product: GTP-binding protein TypA
• Protein accession: YP_699059
• Protein GI: 110801825
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAACG AATTTACAAG AAATGATATT AGAAATATAG CTATAATCGC TCACGTTGAC 
CATGGTAAAA CAACTTTAGT GGATGCATTA TTAAGACAAA GTAATGTTTT TAGAACAAAC 
GAAAAAGTAG AAGAGAGAGT AATGGACTCA AATGACTTAG AAAAAGAAAG AGGTATTACA 
ATACTTTCAA AAAATACAGC AGTTCATTAT GACGGGGTTA AAATAAATAT AATAGATACA 
CCAGGACACG CTGATTTCGG AGGAGAGGTT GAACGTGTAC TTAAAATGGT AGAAAGTGTT 
TTACTTGTAG TAGACTCATA TGAAGGGGCT ATGCCACAAA CAAAATTCGT TTTAAGAAAA 
GCTCTTGAGT TAGGATTAAA ACCAATAGTT GTTATAAACA AAATAGATAA ACCAGATGCT 
AGACCAGAAG AAGTTATTGA CGAAATATTT GAATTATTCT TAGAGCTTGG TGCAGATGAT 
GAGCAATTAG ATTTCCCAAT AGTTTATGCT TCAGCTAGAG ATGGAGTTGC TACAATTAAT 
ATAGATGAGC CAAAAGATAA CATGAAAGAC CTATTCGATA CTATAATCGA AAAAGTTGAA 
TCACCAAAGG GATCTATAGA AGATAGCTTG CAAATGTTAG TTACAACTTT AGATTCAAGT 
GAATATGTTG GTAAAATAGC TATAGGTAAA ATAACTAGAG GAGTAGCTAA GAAAAACCAA 
CAAGCTGCTG TTGTAAGACA AGATGGAACA GTAAATAAAT TCAAAATATC AAGTCTTTAT 
ACTCATGATG GATTAAAGAG AATAGAGGTT GAGGAAGCAC AATTAGGAGA TATAGTTGCA 
ATAAGTGGTA TATCTGACGT AAATATTGGA GAAACTATAA CAGATGCACA AAATCCAGAA 
GGATTACCAT TTGTTAAAAT AGACGAGCCT ACATTAAACA TGAACTTTAT GGTTAATGAC 
TCACCATTTG CTGGTAGAGA AGGGGATTTC GTAACTTCAA GACATTTAAG AGATAGATTA 
TTAAAGGAAT TAGAAACTAA CGTAAGTTTA AAAGTTAAAG AAATAACTCC AGATTGTTTC 
GAAGTAAGTG GTAGAGGAGA GCTACATCTT TCAATACTTA TAGAAACAAT GAGAAGAGAA 
GGATATGAAT TCCAAGTTTC TAAGCCAAAC GTTATAACAA AAATAGATGA AAATGGTGTT 
AAGGTTGAAC CAATAGAGCA CTTAACTATA GACGTTCCAG AAGAATTTAT GGGACCTGTT 
ATGGAAAAAT TAGGACCTAG AAAAGCTGAA ATGGTAAATA TGACTTCAGC TGTTAATGGA 
TACTCAAGAT TAGAGTTCAA AATACCTGCA AGAGGACTTA TAGGATTTAG AAATGAATTC 
ATGACAGATA CAAAAGGTAA CGGAATAATG AACCATGTAT TTGATGGATT TGAAAAATAC 
AAAGGAGAGA TCCCAGGAAG AAGTAGAGGA TCAATCGTAG TATTTGAATC AGGAGAAGCA 
GTTACATATG GATTATTTAA TGCTCAAGAA AGAGGAACTT TATTCATAGA GCCAGGTACA 
GAAGTTTATG CTGGAATGGT TTGTGGAGAA TGTTCAAGAG CAGATGACAT AGACGTTAAT 
ATTTGTAAGA AGAAACAATT AACTAATACA AGATCATCTG GAGCTGATGA TGCTTTAAAA 
TTAACTCCAG TAAGACAAAT GTCATTAGAG CAATGTTTAG AATTCATAAA CAATGACGAA 
TTAGTTGAAG TTACTCCAGT AAATGTAAGA ATGAGAAAGA GAATCTTAGA CAGTGCTGAG 
AGAAAGAGAG CTATAAATAG AAGTAAAAAA TAA 

 

Protein sequence

MSNEFTRNDI RNIAIIAHVD HGKTTLVDAL LRQSNVFRTN EKVEERVMDS NDLEKERGIT 
ILSKNTAVHY DGVKINIIDT PGHADFGGEV ERVLKMVESV LLVVDSYEGA MPQTKFVLRK 
ALELGLKPIV VINKIDKPDA RPEEVIDEIF ELFLELGADD EQLDFPIVYA SARDGVATIN 
IDEPKDNMKD LFDTIIEKVE SPKGSIEDSL QMLVTTLDSS EYVGKIAIGK ITRGVAKKNQ 
QAAVVRQDGT VNKFKISSLY THDGLKRIEV EEAQLGDIVA ISGISDVNIG ETITDAQNPE 
GLPFVKIDEP TLNMNFMVND SPFAGREGDF VTSRHLRDRL LKELETNVSL KVKEITPDCF 
EVSGRGELHL SILIETMRRE GYEFQVSKPN VITKIDENGV KVEPIEHLTI DVPEEFMGPV 
MEKLGPRKAE MVNMTSAVNG YSRLEFKIPA RGLIGFRNEF MTDTKGNGIM NHVFDGFEKY 
KGEIPGRSRG SIVVFESGEA VTYGLFNAQE RGTLFIEPGT EVYAGMVCGE CSRADDIDVN 
ICKKKQLTNT RSSGADDALK LTPVRQMSLE QCLEFINNDE LVEVTPVNVR MRKRILDSAE 
RKRAINRSKK