Gene CPR_1690 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_1690 
Symbolrnc 
ID4206544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp1886768 
End bp1887493 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content28% 
IMG OID642566240 
Productribonuclease III 
Protein accessionYP_699005 
Protein GI110801795 
COG category[K] Transcription 
COG ID[COG0571] dsRNA-specific ribonuclease 
TIGRFAM ID[TIGR02191] ribonuclease III, bacterial 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00872848 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTTA AGGTGAAAGA TATAAATTTA ATAGAAGTTG AAAAACTTAT AGGAATTGAG 
TTTGAAAATA AAGGAGTGCT TATAACAGCA TTAACGCATA GTTCATATGC AAATCAATTT
AAAGATGTAA AATACAATGA AAGATTAGAA TTTTTAGGAG ATTCAGTTTT ACAGCTTTGT
GTTACAAAAT ATTTATTTAA TAATTACAAA GATAAATCTG AAGGTGAATT AACAAAAATA
AGAGCTTTAG TAGTTTGTGA AAATTCTTTA CATAAAGTTT CAAAAAATCT ATCACTTGGT
AAGTATATAA GAATGAGTAA AGGTGAGGAG TTAACTGGAG GAAGAGAAAG AACTTCAATA
CAAGCCGATG CATTAGAGGC AGTAATTGCT GCAGTTTATT TAGATAAAGG AATTGAAGTT
GCAAATGACT TTATTTTAAG AAACTTTAAA GATGTTATAG ATAAGGCTAT AAATGAAGAA
ATAATCTTAG ACTTTAAAAC TAGATTACAA GAAGTTCTTC AAAAAAATGG GGAAGTTAAT
ATTGTTTATA ATTTAGTTAA GCATGAAGGA CCACCTCACA GAAGAAAATT CTTTACAGAT
CTTTTAATTA ATAATGAGGT TATGGGTCAA GGTGTTGGAT TTAGTAAAAA AGAATCAGAA
CAAAATGCAG CTAAAGCAGC ACTGCAAAGG TTAGGTGAAA TTAAATGGGA AAAAGACACT
ATATAA
 
Protein sequence
MNFKVKDINL IEVEKLIGIE FENKGVLITA LTHSSYANQF KDVKYNERLE FLGDSVLQLC 
VTKYLFNNYK DKSEGELTKI RALVVCENSL HKVSKNLSLG KYIRMSKGEE LTGGRERTSI
QADALEAVIA AVYLDKGIEV ANDFILRNFK DVIDKAINEE IILDFKTRLQ EVLQKNGEVN
IVYNLVKHEG PPHRRKFFTD LLINNEVMGQ GVGFSKKESE QNAAKAALQR LGEIKWEKDT
I