Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1690 |
Symbol | rnc |
ID | 4206544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1886768 |
End bp | 1887493 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 642566240 |
Product | ribonuclease III |
Protein accession | YP_699005 |
Protein GI | 110801795 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00872848 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTTA AGGTGAAAGA TATAAATTTA ATAGAAGTTG AAAAACTTAT AGGAATTGAG TTTGAAAATA AAGGAGTGCT TATAACAGCA TTAACGCATA GTTCATATGC AAATCAATTT AAAGATGTAA AATACAATGA AAGATTAGAA TTTTTAGGAG ATTCAGTTTT ACAGCTTTGT GTTACAAAAT ATTTATTTAA TAATTACAAA GATAAATCTG AAGGTGAATT AACAAAAATA AGAGCTTTAG TAGTTTGTGA AAATTCTTTA CATAAAGTTT CAAAAAATCT ATCACTTGGT AAGTATATAA GAATGAGTAA AGGTGAGGAG TTAACTGGAG GAAGAGAAAG AACTTCAATA CAAGCCGATG CATTAGAGGC AGTAATTGCT GCAGTTTATT TAGATAAAGG AATTGAAGTT GCAAATGACT TTATTTTAAG AAACTTTAAA GATGTTATAG ATAAGGCTAT AAATGAAGAA ATAATCTTAG ACTTTAAAAC TAGATTACAA GAAGTTCTTC AAAAAAATGG GGAAGTTAAT ATTGTTTATA ATTTAGTTAA GCATGAAGGA CCACCTCACA GAAGAAAATT CTTTACAGAT CTTTTAATTA ATAATGAGGT TATGGGTCAA GGTGTTGGAT TTAGTAAAAA AGAATCAGAA CAAAATGCAG CTAAAGCAGC ACTGCAAAGG TTAGGTGAAA TTAAATGGGA AAAAGACACT ATATAA
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Protein sequence | MNFKVKDINL IEVEKLIGIE FENKGVLITA LTHSSYANQF KDVKYNERLE FLGDSVLQLC VTKYLFNNYK DKSEGELTKI RALVVCENSL HKVSKNLSLG KYIRMSKGEE LTGGRERTSI QADALEAVIA AVYLDKGIEV ANDFILRNFK DVIDKAINEE IILDFKTRLQ EVLQKNGEVN IVYNLVKHEG PPHRRKFFTD LLINNEVMGQ GVGFSKKESE QNAAKAALQR LGEIKWEKDT I
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